search for peptide interacting proteins - Eszter
Issue #45
new
I was interested in looking up which proteins showed interaction/enrichment with a peptide sequence in Pro-PD, that I'm now trying in pulldowns. Would it possible to make a search tool for that? Kind of to use as a comparison between phage display and pull downs.
As part of “searchability”. During the meeting we discussed it would be nice to be able to search by bait. But today looking at some data with Ylva, we realized it would be nice to be able to search in the other direction. Example: if someone asks “do you find X protein in your selections” it would be nice to know that either if it’s a bait or if it’s being found in selection(s) with our bait(s).
Rephrasing in case it’s not clear: if I search for a protein (accession) in the ProP-PD resource, it would be nice to get information both if it’s in the bait side and/or the library side.
I think this aligns with the issue raised here (search by peptide is a more specific version of search by protein).
Let me know if you need more clarification.