Commits

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Author Commit Message Labels Comments Date
Davide Cittaro
major refactory of gt_freq.py, now has options
Davide Cittaro
shabang
Davide Cittaro
all is evaluated only on REF ALT(s)
Davide Cittaro
gentoypes in ref->alt order
Davide Cittaro
Report frequencies = 0
Davide Cittaro
Removed COMMON flags (useless)
Davide Cittaro
fixed an issue with loci never called in controls
Davide Cittaro
fixed an issue with COMMON flag
Davide Cittaro
fixed an issue with COMMON flag
Davide Cittaro
fixed an issue with COMMON flag
Davide Cittaro
fixed header
Davide Cittaro
Work on alleles
Davide Cittaro
Work on alleles
Davide Cittaro
Common GT
Davide Cittaro
bugfx
Davide Cittaro
merge
Davide Cittaro
Only check healthy controls
Davide Cittaro
little script for genotype frequencies
Davide Cittaro
Added a simple script to create R scripts that perform GOSemSim analysis to compare two results from GREAT analysis
Davide Cittaro
support for xgmml output
Davide Cittaro
added a script to calculate k-score for GREAT ontologies
Davide Cittaro
added SPLICE_SITE_REGION annotation
Davide Cittaro
fixed a bug in markvcf
Davide Cittaro
fixed eff splitting after update of vcflib
Davide Cittaro
modified vcf2xls and markvcf
Davide Cittaro
VCF file is no more a stream
Davide Cittaro
if no fields are given, extract everything
Davide Cittaro
correctly assign field name and parse it
Davide Cittaro
initial work to add multiple description to xls file
Davide Cittaro
merged
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