Davide Cittaro avatar Davide Cittaro committed f7dceca

sorted samples in breakdancer vcf

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Files changed (1)


   options.output.write('##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of reads supporting the SV in this sample">\n')
-  for library in bd_info['lib_info'].keys():
+  samples = bd_info['lib_info'].keys()
+  samples.sort()
+  for library in samples:
     options.output.write("\t%s" % os.path.basename(library))
   # process lines
   samples = bd_info['lib_info'].keys()
+  samples.sort()
   for record in cli_options.input:
     sv = SV_variant(record, genome)
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