1. Davide Cittaro
  2. utils
  3. Issues
Issue #1 resolved

Skip non canonical chromosome

Vincenza Maselli
created an issue

Maybe could be useful to add a test in order to skip the non canonical chromosome in the markvcf.py script.

Here there is the error I got

Traceback (most recent call last): File "/home/vmaselli/utils/markvcf.py", line 213, in <module> if name == "main": mark_main() File "/home/vmaselli/utils/markvcf.py", line 209, in mark_main annotate_vcf(options.vcf, gene_properties, options.name) File "/home/vmaselli/utils/markvcf.py", line 147, in annotate_vcf if not gene_props[chrom]: KeyError: 'chr11_gl000202_random'

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