Skip non canonical chromosome

Issue #1 resolved
Vincenza Maselli
created an issue

Maybe could be useful to add a test in order to skip the non canonical chromosome in the script.

Here there is the error I got

Traceback (most recent call last): File "/home/vmaselli/utils/", line 213, in <module> if name == "main": mark_main() File "/home/vmaselli/utils/", line 209, in mark_main annotate_vcf(options.vcf, gene_properties, File "/home/vmaselli/utils/", line 147, in annotate_vcf if not gene_props[chrom]: KeyError: 'chr11_gl000202_random'

Comments (1)

  1. Log in to comment