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Dénes Türei induced_subgraph by Gene Symbols or UniProt IDs with pypath

Created by Dénes Türei
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File pypath_subgraph.py Added

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+#!/usr/bin/env python
+
+import pypath
+
+pa = pypath.PyPath()
+
+pa.init_network(pypath.data_formats.pathway)
+
+[v.index for v in  pa.gss(['ULK1', 'AKT1', 'EGF', 'EGFR', 'foobar'])]
+# [1384, 1312, 727, 68]
+
+# for UniProts:
+
+# [v.index for v in  pa.ups(['P00533', ...])]
+
+g0 = pa.graph.induced_subgraph([v.index for v in  pa.gss(['ULK1', 'AKT1', 'EGF', 'EGFR', 'foobar'])])
+g0.vcount()
+# 4
+g0.ecount()
+# 1
+g0
+# <igraph.Graph object at 0x6d7c323c0048>
+g0.es[0]['refs_by_source']
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