Snippets

Dénes Türei count loops of 4 steps

Created by Dénes Türei
loops.py
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#!/usr/bin/env python

# Dénes Türei EMBL 2017
# turei.denes@gmail.com

import pypath
import numpy as np

pa = pypath.PyPath()
pa.load_resource(pypath.data_formats.pathway['signor'])
a = np.array(list(pa.graph.get_adjacency()))
a4 = np.linalg.matrix_power(a, 4)

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