SBS ts to mp4 conversion fails

I get this error every time. Is there a way to stop conversion? This error will also interrupt any autograbber operation and nothing is written to .downloaded_auto.txt.
Example:
INFO Converting Bref S1 Ep53 - Annoying People.ts to mp4
avconv version 11.3-6:11.3-1~trusty, Copyright (c) 2000-2014 the Libav developers
  built on Apr 13 2015 22:25:55 with gcc 4.8 (Ubuntu 4.8.2-19ubuntu1)
[mpegts @ 0x947ce0] max_analyze_duration 5000000 reached
[NULL @ 0x94ce80] start time is not set in estimate_timings_from_pts
Input #0, mpegts, from 'Bref S1 Ep53 - Annoying People.ts':
  Duration: 00:02:18.39, start: 0.100500, bitrate: 1053 kb/s
  Program 1 
    Stream #0.0[0x100]: Video: h264 (Constrained Baseline), yuv420p, 640x360 [PAR 1:1 DAR 16:9], 25 fps, 90k tbn, 50 tbc
    Stream #0.1[0x101]: Audio: aac, 44100 Hz, stereo, fltp, 138 kb/s
    Stream #0.2[0x102]: Data: [21][0][0][0] / 0x0015
Output #0, mp4, to 'Bref S1 Ep53 - Annoying People.mp4':
  Metadata:
    encoder         : Lavf56.1.0
    Stream #0.0: Video: libx264, yuv420p, 640x360 [PAR 1:1 DAR 16:9], q=2-31, 90k tbn, 90k tbc
    Stream #0.1: Audio: libvo_aacenc, 44100 Hz, stereo, 138 kb/s
Stream mapping:
  Stream #0:0 -> #0:0 (copy)
  Stream #0:1 -> #0:1 (copy)
Press ctrl-c to stop encoding
frame= 3460 fps=  0 q=-1.0 Lsize=   16830kB time=138.36 bitrate= 996.5kbits/s    
video:14624kB audio:2143kB other streams:0kB global headers:0kB muxing overhead: 0.376887%
Unsupported codec with id 0 for input stream 2
Traceback (most recent call last):
  File "/home/user/bin/webdl/autograbber.py", line 75, in <module>
    main(destdir, patternfile)
  File "/home/user/bin/webdl/autograbber.py", line 65, in main
    match(download_list, node, search)
  File "/home/user/bin/webdl/autograbber.py", line 55, in match
    match(download_list, child, pattern, count+1)
  File "/home/user/bin/webdl/autograbber.py", line 55, in match
    match(download_list, child, pattern, count+1)
  File "/home/user/bin/webdl/autograbber.py", line 55, in match
    match(download_list, child, pattern, count+1)
  File "/home/user/bin/webdl/autograbber.py", line 55, in match
    match(download_list, child, pattern, count+1)
  File "/home/user/bin/webdl/autograbber.py", line 43, in match
    if node.download():
  File "/home/user/bin/webdl/sbs.py", line 33, in download
    return download_hls(filename, video_url)
  File "/home/user/bin/webdl/common.py", line 310, in download_hls
    return convert_to_mp4(filename)
  File "/home/user/bin/webdl/common.py", line 272, in convert_to_mp4
    return remux(filename, filename_mp4)
  File "/home/user/bin/webdl/common.py", line 254, in remux
    if not check_video_durations(infile, outfile):
  File "/home/user/bin/webdl/common.py", line 227, in check_video_durations
    flv_duration = get_duration(flv_filename)
  File "/home/user/bin/webdl/common.py", line 224, in get_duration
    raise Exception("Unable to determine video duration of " + filename)
Exception: Unable to determine video duration of Bref S1 Ep53 - Annoying People.ts
An .mp4 is produced but the audio track is silent.
Ubuntu 14.04.5
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