Assigns SNP values according to allele frequencies at two loci and specified linkage disequilibrium (D). Note: all individuals are homozygotes, i.e. their haplotypes are identical. More...
Assumes chromosome ids are assigned consecutively (2 per individual): 0, ..., 2N-1
parameter | default | notes |
---|---|---|
population_size = <int> | none | required |
locus_1 = <id> | none | required |
allele_frequency_1 = <float> | none | required |
locus_2 = <id> | none | required |
allele_frequency_2 = <float> | none | required |
id_offset_step = <int>) | none | required |
Example: example_ld.txt