generates population configurations for a linear stepping stone model, with specified trajectories for population sizes and migration rates More...
PopulationConfigGenerator general parameters:
parameter | default | notes |
---|---|---|
generation_count = <int> | none | required |
population_count = <int> | 1 | optional |
id_offset_step = <int> | 0 | optional |
chromosome_pair_count = <int> | 1 | optional |
chromosome_lengths = <int> [<int> ... ] | none | optional (must match chromosome_pair_count) |
PopulationConfigGenerator_LinearSteppingStone specific parameters:
parameter | default | notes |
---|---|---|
population_size_trajectory = <id_trajectory> | none | required |
migration_rate_default = <id_trajectory> | none | optional |
migration_rate:from:to = <id_trajectory> <int_population_from> <int_population_to> | none | optional (1 == first population) |
Notes:
Example: example_stepping_stone.txt