forqs module reference
Forward simulation of Recombination, Quantitative traits, and Selection
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VariantIndicator_TwoLocusLD Class Reference

Assigns SNP values according to allele frequencies at two loci and specified linkage disequilibrium (D). Note: all individuals are homozygotes, i.e. their haplotypes are identical. More...

Assumes chromosome ids are assigned consecutively (2 per individual): 0, ..., 2N-1

parameter default notes
population_size = <int> none required
locus_1 = <id> none required
allele_frequency_1 = <float> none required
locus_2 = <id> none required
allele_frequency_2 = <float> none required
id_offset_step = <int>) none required

Example: example_ld.txt