1. Davide Rambaldi Avatar Davide Rambaldi
  2. Untitled project
  3. bpipe_config
  4. Issues

Feature request

Issue #5 new
Davide Cittaro created an issue

In order to make duplicate removal faster, one can use samblaster streamlined to the aligner, instead of picard's MarkDuplicates, i.e.

bwa mem [OPTIONS] | samblaster | samtools view -Su - | samtools sort -

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