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Welcome to the ONTO-Toolkit wiki

ONTO-Toolkit is a collection of Galaxy tools which support the manipulation of OBO-formatted bio-ontologies (such as the Gene Ontology (GO).

ONTO-Toolkit provides a set of tools to perform the following operations on OBO-formatted ontologies (spec >= 1.2):

  • Get all the ancestors of a given term
  • Get the child terms of a given term
  • Get all the descendents of a given term
  • Get the parent terms of a given term
  • Get the relationship types of a given ontology
  • Get all the term names and their IDs of a given ontology
  • Get all the terms and theirs definitions of a given ontology
  • Transform an OBO-formatted ontology to:

Requirements

ONTO-Toolkit requires:

Questions or problems?

ONTO-Toolkit is provided as-is. Please report any issues.

Citing ONTO-Toolkit

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy

Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.

BMC Bioinformatics 11(Suppl 12):S8

See also

- Galaxy Tool Shed

- OPPL

- ONTO-perl

- Galaxy portal implementing OPPL-Galaxy

- OPPL-Galaxy

Updated