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Eric Floehr committed 25865a6

Initial commit

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Files changed (2)

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+from pyevolve import Util
+from pyevolve import GTree
+from pyevolve import GSimpleGA, GenomeBase, Consts, Selectors, DBAdapters
+from pyevolve import Consts
+from datetime import date, timedelta
+import math
+import random
+
+data = []
+
+# The operators available to the GP
+@GTree.gpdec(representation="+", color="coral")
+def gp_add(a, b): return a+b
+
+@GTree.gpdec(representation="-", color="coral")
+def gp_sub(a, b): return a-b
+
+@GTree.gpdec(representation="avg", color="deepskyblue")
+def gp_avg(a, b): return (a+b)/2.0
+
+@GTree.gpdec(representation="max", color="lawngreen")
+def gp_max(a, b): return max(a,b)
+
+@GTree.gpdec(representation="min", color="lawngreen")
+def gp_min(a, b): return min(a,b)
+
+@GTree.gpdec(representation="if <", color="yellow")
+def gp_iflt(a, b, c, d):
+    if a<b:
+        return c
+    else:
+        return d
+
+
+# The fitness function iterates over the data set and
+# calculating the error of the forecast by the GP
+def eval_func(genome):
+    code_comp = genome.getCompiledCode()
+
+    error = 0.0
+    count = 0.0
+    for day,T,Y,L,C,actual in data:
+        forecast = eval(code_comp)
+        error += abs(forecast-actual)
+        count += 1
+
+    return error/count
+
+
+# This will print out a png (assuming pydot is installed)
+# every 10 generations of the fittest individual
+def step_callback(gp_engine):
+    gen = gp_engine.getCurrentGeneration()
+    if gen % 10 == 0:
+        filename = "best_{gen}.png".format(gen=gen) 
+        GTree.GTreeGP.writePopulationDot(gp_engine, filename, "png", 0, 1)
+
+
+def main_run():
+    genome = GTree.GTreeGP()
+    genome.setParams(max_depth=5, method="ramped")
+    genome.evaluator.set(eval_func)
+
+    ga = GSimpleGA.GSimpleGA(genome)
+    ga.setParams(gp_terminals       = ['T', 'L', 'C', 'ephemeral:random.randint(-10,10)'],
+                 gp_function_prefix = "gp")
+
+    ga.setMinimax(Consts.minimaxType["minimize"])
+    ga.selector.set(Selectors.GRouletteWheel)
+    ga.setGenerations(1000)
+    ga.setCrossoverRate(1.0)
+    ga.setMutationRate(0.25)
+    ga.setPopulationSize(50)
+    ga.stepCallback.set(step_callback)
+
+    # Uncomment to go interactive at specified generation
+    #ga.setInteractiveGeneration(100)
+
+    # Uncomment to get real-time plots
+    #adapter = DBAdapters.DBVPythonGraph(identify="run_01", frequency = 1)
+    #ga.setDBAdapter(adapter)
+
+    ga(freq_stats=10)
+    best = ga.bestIndividual()
+    print best
+
+    GTree.GTreeGP.writePopulationDot(ga, "best.png", "png", 0, 1)
+
+
+# day is the day the forecast is for
+# per is the high temperature for the previous day
+# peryest is the high temperature two days ago
+# perlast was the high for this day the previous year
+# clm is the climate normal high (the average high)
+# actual is the actual high temperature, and what the GP is trying to predict
+def load_data(filename):
+    count = 0
+    file = open(filename)
+    for line in file.readlines():
+	day,per,peryest,perlast,clm,actual = line.split(',')
+        data.append((day,int(per),int(peryest),int(perlast),int(clm),int(actual)))
+    file.close()
+
+    # What's the error for different unskilled methods?
+    pere = peryeste = perlaste = clme = 0
+    for day,per,peryest,perlast,clm,actual in data:
+        pere += abs(per-actual)
+        peryeste += abs(peryest-actual)
+        perlaste += abs(perlast-actual)
+        clme += abs(clm-actual)
+
+    n = float(len(data))
+    print "PER:",pere/n
+    print "YST:",peryeste/n
+    print "LST:",perlaste/n
+    print "CLM:",clme/n
+
+
+if __name__ == "__main__":
+    load_data('KCMH.csv')
+    main_run()
+