HDF5 configuration fails on Datura

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Issue #1818 closed
Ian Hinder created an issue

With the current ET trunk, I get the following error on a clean build on Datura:


Running configuration script for thorn HDF5: Additional requested language support: Fortran ERROR: ERROR in HDF5 configuration: ERROR: H5pubconf.h not found in

The build then hangs at that point with no further output. This may be related to the recent changes to the HDF5 thorn to factor out common code in external libraries. The error message is one issue, the hanging build is another I think.

Keyword: HDF5

Comments (7)

  1. Ian Hinder reporter
    • removed comment

    Reverting commit

    commit acb70868fc967ed0f0a09fccc11400f4bb3dbaa0
    Author: knarf <knarf@fb53df36-e548-4a1e-8150-ab98cbd5e786>
    Date:   Tue Oct 13 14:53:26 2015 +0000
    
        another attempt on using some unified bash helper functions. Tested on debian, mike and stampede
    
        git-svn-id: https://svn.cactuscode.org/projects/ExternalLibraries/HDF5/trunk@118 fb53df36-e548-4a1e-8150-ab98cbd5e786
    

    in the HDF5 thorn allows the configuration to proceed.

  2. Frank Löffler
    • removed comment

    I don't have access to Datura. Do you have a little more information? Could you run detect.sh by hand, defining CCTK_HOME beforehand?

  3. Frank Löffler
    • removed comment

    I committed a change that should fix the hang. In another commit I try to fix the code finding the includes for a library location specified with HDF5_DIR.

  4. Frank Löffler
    • removed comment

    In another commit I try to fix the code finding the includes for a library location specified with HDF5_DIR. It might find the library now, depending on how the hdf5 installation was done (can't look myself, but the old code didn't look at all, which was a bug).

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