sim run silently overwrites existing restart output data if started from an existing restart

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Issue #1914 new
Ian Hinder created an issue

If the queueing system reruns your job because you forgot to add --no-requeue to your submit script, simfactory will just restart the run and overwrite the existing output with no warning or error message, because the submit script calls sim run with --restart-id <id>, which allows this to happen. SimFactory should never allow existing data to be lost.

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