Uploading >50 files

I am trying to run a cgMLST analysis and a phylogenetic tree with branch stats on my 53 E. coli genomes and I am facing a number of problems. 1. I am having a hard time getting to upload the files. I zipped the files first as it is mentioned in the documentation but I couldn't upload more than one file at a time. I had to upload my read1 and read2 files separately one at a time. This look an awful lot of time and still kept only half of the files for analysis. I seem to have run out of patience. Is there a more efficient way to d this? 2. All the genomes (31 or so that got uploaded) have failed QC. I don't understand why as I have been able to some other types of analyses on this successfully. 3. When I try to find the ST(s) it only shows two strains, even though I have over 30 uploaded genomes. My jobs are currently assigned 3174280-3174311 job IDs. Any help to address these problems would be super appreciated.

Supriya

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