Wiki
Clone wikienterobase-web / Tutorials
Top level links:
- Main top level page for all documentation
- EnteroBase Features
- Registering on EnteroBase and logging in
- Tutorials
- Using the API
- About the underlying pipelines and other internals
- How schemes in EnteroBase work
- FAQ
Tutorials
This documentation has been deprecated and maybe out of date, please see the latest documentation
Basics
Searching, saved queries, downloading data
Managing your data and analysis results
MS Trees
Creating an MS Tree of all Typhi and coloring it by third party genotype data
SNP Trees
Editing Metadata
Uploading Metadata from a Spreadsheet
Other Tutorials and Worked Examples
Understanding deeper lineages in EnteroBase
Outbreak! Applying EnteroBase to real data
Downloading cgMLST profiles from the website
search neighbors of ST types
search STs by combination of alleles (for users from the legacy MLST web site)
EnteroBase Training Courses
EnteroBase training (17th May 2016)
A beginner's course on EnteroBase (but some of it is quite out of date).
Video of training course
Training materials
EnteroBase training (23rd February 2017)
A more advanced course on EnteroBase. (However, newcomers to EnteroBase may be able to benefit from it, particularly the first session.)
Video of first session of training course
Video of second session of training course, primarily on the API
Updated