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Faheem Mitha committed d1d0028

Update paper

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 +            #print "forward", rss in s
 +            #print "reversed", rss in sc
 +            # check that rss is contained in sequence
-+            if rss in s and rss in sc:
++            if rss in s or rss in sc:
 +                rss_in_seq = True
 +        rss_in_seqlst = rss_in_seq
 +        seqcontainsrss.append(rss_in_seqlst)