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Faheem Mitha committed 26ebef7

Switch to MM12RSS.fasta fasta file for mouse12rss, and change corresponding datafiles_info.

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  • Parent commits b57aed5

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File corrmodel/default_conf.yaml

 datadir: /usr/share/corrmodel/data
 
 sim_cols: 28
-#sim_model: "[[5, 6], [7, 13, 18], [9, 22], [10, 12], [15, 16, 17], [20, 21]]"
 default_model: mouse12rss
 
 sim_rownumlst: [50, 100, 150, 200, 250, 300]
 sim_colnumlst: [10, 20, 30]
 
 mouse12rss: &mouse12rsslabel
-    fasta : "12mouseRSS.fasta"
+    fasta : "MM12RSS.fasta"
     rows : 201
     cols : 28
     seqlen : 28
 
     # NOTE: Check these files to see how many of them actually contain sequences
 
-    datafiles_info : [['AF018146', 'forward'], ['AF018146', 'reverse'], ['X58411', 'reverse'], ['X58414', 'reverse'], ['AE000665', 'forward'], ['AE000665', 'reverse'], ['M38103', 'reverse'], ['M64239', 'reverse'], ['M38105', 'reverse'], ['X03761', 'reverse'], ['X03057', 'reverse'], ['X17177', 'reverse'], ['X02858', 'reverse'], ['X02862', 'reverse'], ['X03056', 'reverse'], ['X02843', 'reverse'], ['X03058', 'reverse'], ['X02859', 'reverse'], ['X03059', 'reverse'], ['D00080', 'forward'], ['D00081', 'forward'], ['D00082', 'forward'], ['M28132', 'forward'], ['M28134', 'forward'], ['Z72384', 'forward'], ['Z72382', 'forward'], ['J00562', 'forward'], ['K02418', 'forward'], ['K02159', 'forward'], ['K02160', 'forward'], ['K02158', 'forward'], ['K02161', 'forward'], ['K02162', 'forward'], ['X16954', 'forward'], ['X16955', 'forward'], ['Y15968', 'forward'], ['Y15972', 'forward'], ['V01565', 'forward'], ['K00884', 'forward'], ['V01564', 'forward'], ['M14360', 'forward'], ['Y15975', 'forward'], ['Y15976', 'forward'], ['Y15978', 'forward'], ['Y15981', 'forward'], ['AF044198', 'forward'], ['Y15977', 'forward'], ['Y15980', 'forward'], ['Y15982', 'forward'], ['M15520', 'forward'], ['M54906', 'forward'], ['AF029261', 'forward'], ['J00545', 'forward'], ['V01563', 'forward'], ['AJ235963', 'forward'], ['AJ235953', 'forward'], ['AJ235940', 'forward'], ['AJ231200', 'forward'], ['AJ231206', 'forward'], ['AJ231207', 'forward'], ['AJ132683', 'forward'], ['AJ231263', 'forward'], ['AJ235938', 'forward'], ['AJ239198', 'forward'], ['AJ231231', 'forward'], ['AJ231223', 'forward'], ['AJ231225', 'forward'], ['AJ231221', 'forward'], ['AJ231234', 'forward'], ['AJ231209', 'forward'], ['AJ231248', 'forward'], ['AJ231250', 'forward'], ['AJ231273', 'forward'], ['AJ231222', 'forward'], ['AJ235942', 'forward'], ['AJ235943', 'forward'], ['AJ231218', 'forward'], ['AJ231219', 'forward'], ['AJ231216', 'forward'], ['AJ231217', 'forward'], ['AJ231212', 'forward'], ['AJ231213', 'forward'], ['AJ231214', 'forward'], ['AJ231215', 'forward'], ['AJ231224', 'forward'], ['AJ231226', 'forward'], ['AJ231229', 'forward'], ['AJ235944', 'forward'], ['AJ235946', 'forward'], ['AJ235947', 'forward'], ['AJ235948', 'forward'], ['AJ235958', 'forward'], ['AJ231241', 'forward'], ['AJ239197', 'forward'], ['AJ231244', 'forward'], ['AJ231247', 'forward'], ['AJ231256', 'forward'], ['AJ235949', 'forward'], ['AJ235950', 'forward'], ['AJ235951', 'forward'], ['AJ235956', 'forward'], ['AJ235961', 'forward'], ['AJ235962', 'forward'], ['AJ235967', 'forward'], ['AJ235968', 'forward'], ['AJ235966', 'forward'], ['AJ231258', 'forward'], ['AJ231259', 'forward'], ['AJ235964', 'forward'], ['AJ235973', 'forward'], ['AJ235974', 'forward'], ['AJ231264', 'forward'], ['AJ231269', 'forward'], ['AJ231274', 'forward'], ['AJ235935', 'forward'], ['AJ235936', 'forward'], ['AJ231243', 'forward'], ['J00434', 'reverse'], ['M35332', 'reverse'], ['J00436', 'reverse'], ['M60961', 'reverse'], ['M60955', 'reverse'], ['J00431', 'reverse'], ['J00435', 'reverse'], ['J00437', 'reverse'], ['J00432', 'reverse'], ['J00433', 'reverse'], ['J00438', 'reverse'], ['J00439', 'reverse'], ['D13199', 'reverse'], ['M23243', 'reverse'], ['L32868', 'reverse'], ['J00440', 'reverse'], ['J00434', 'forward'], ['M35332', 'forward'], ['J00436', 'forward'], ['J00431', 'forward'], ['J00435', 'forward'], ['J00437', 'forward'], ['J00432', 'forward'], ['J00433', 'forward'], ['J00438', 'forward'], ['J00439', 'forward'], ['D13199', 'forward'], ['L32868', 'forward'], ['J00440', 'forward']]
+    #datafiles_info : [['AF018146', 'forward'], ['AF018146', 'reverse'], ['X58411', 'reverse'], ['X58414', 'reverse'], ['AE000665', 'forward'], ['AE000665', 'reverse'], ['M38103', 'reverse'], ['M64239', 'reverse'], ['M38105', 'reverse'], ['X03761', 'reverse'], ['X03057', 'reverse'], ['X17177', 'reverse'], ['X02858', 'reverse'], ['X02862', 'reverse'], ['X03056', 'reverse'], ['X02843', 'reverse'], ['X03058', 'reverse'], ['X02859', 'reverse'], ['X03059', 'reverse'], ['D00080', 'forward'], ['D00081', 'forward'], ['D00082', 'forward'], ['M28132', 'forward'], ['M28134', 'forward'], ['Z72384', 'forward'], ['Z72382', 'forward'], ['J00562', 'forward'], ['K02418', 'forward'], ['K02159', 'forward'], ['K02160', 'forward'], ['K02158', 'forward'], ['K02161', 'forward'], ['K02162', 'forward'], ['X16954', 'forward'], ['X16955', 'forward'], ['Y15968', 'forward'], ['Y15972', 'forward'], ['V01565', 'forward'], ['K00884', 'forward'], ['V01564', 'forward'], ['M14360', 'forward'], ['Y15975', 'forward'], ['Y15976', 'forward'], ['Y15978', 'forward'], ['Y15981', 'forward'], ['AF044198', 'forward'], ['Y15977', 'forward'], ['Y15980', 'forward'], ['Y15982', 'forward'], ['M15520', 'forward'], ['M54906', 'forward'], ['AF029261', 'forward'], ['J00545', 'forward'], ['V01563', 'forward'], ['AJ235963', 'forward'], ['AJ235953', 'forward'], ['AJ235940', 'forward'], ['AJ231200', 'forward'], ['AJ231206', 'forward'], ['AJ231207', 'forward'], ['AJ132683', 'forward'], ['AJ231263', 'forward'], ['AJ235938', 'forward'], ['AJ239198', 'forward'], ['AJ231231', 'forward'], ['AJ231223', 'forward'], ['AJ231225', 'forward'], ['AJ231221', 'forward'], ['AJ231234', 'forward'], ['AJ231209', 'forward'], ['AJ231248', 'forward'], ['AJ231250', 'forward'], ['AJ231273', 'forward'], ['AJ231222', 'forward'], ['AJ235942', 'forward'], ['AJ235943', 'forward'], ['AJ231218', 'forward'], ['AJ231219', 'forward'], ['AJ231216', 'forward'], ['AJ231217', 'forward'], ['AJ231212', 'forward'], ['AJ231213', 'forward'], ['AJ231214', 'forward'], ['AJ231215', 'forward'], ['AJ231224', 'forward'], ['AJ231226', 'forward'], ['AJ231229', 'forward'], ['AJ235944', 'forward'], ['AJ235946', 'forward'], ['AJ235947', 'forward'], ['AJ235948', 'forward'], ['AJ235958', 'forward'], ['AJ231241', 'forward'], ['AJ239197', 'forward'], ['AJ231244', 'forward'], ['AJ231247', 'forward'], ['AJ231256', 'forward'], ['AJ235949', 'forward'], ['AJ235950', 'forward'], ['AJ235951', 'forward'], ['AJ235956', 'forward'], ['AJ235961', 'forward'], ['AJ235962', 'forward'], ['AJ235967', 'forward'], ['AJ235968', 'forward'], ['AJ235966', 'forward'], ['AJ231258', 'forward'], ['AJ231259', 'forward'], ['AJ235964', 'forward'], ['AJ235973', 'forward'], ['AJ235974', 'forward'], ['AJ231264', 'forward'], ['AJ231269', 'forward'], ['AJ231274', 'forward'], ['AJ235935', 'forward'], ['AJ235936', 'forward'], ['AJ231243', 'forward'], ['J00434', 'reverse'], ['M35332', 'reverse'], ['J00436', 'reverse'], ['M60961', 'reverse'], ['M60955', 'reverse'], ['J00431', 'reverse'], ['J00435', 'reverse'], ['J00437', 'reverse'], ['J00432', 'reverse'], ['J00433', 'reverse'], ['J00438', 'reverse'], ['J00439', 'reverse'], ['D13199', 'reverse'], ['M23243', 'reverse'], ['L32868', 'reverse'], ['J00440', 'reverse'], ['J00434', 'forward'], ['M35332', 'forward'], ['J00436', 'forward'], ['J00431', 'forward'], ['J00435', 'forward'], ['J00437', 'forward'], ['J00432', 'forward'], ['J00433', 'forward'], ['J00438', 'forward'], ['J00439', 'forward'], ['D13199', 'forward'], ['L32868', 'forward'], ['J00440', 'forward']]
+
+    datafiles_info : [['AE000665', 'reverse'], ['AF018146', 'forward'], ['AF018146', 'reverse'], ['AF019412', 'reverse'], ['AF021335', 'forward'], ['AF021335', 'reverse'], ['AF029261', 'forward'], ['AF037352', 'reverse'], ['AF044198', 'forward'], ['AJ132683', 'forward'], ['AJ231200', 'forward'], ['AJ231206', 'forward'], ['AJ231207', 'forward'], ['AJ231209', 'forward'], ['AJ231212', 'forward'], ['AJ231213', 'forward'], ['AJ231214', 'forward'], ['AJ231215', 'forward'], ['AJ231216', 'forward'], ['AJ231217', 'forward'], ['AJ231218', 'forward'], ['AJ231219', 'forward'], ['AJ231221', 'forward'], ['AJ231222', 'forward'], ['AJ231223', 'forward'], ['AJ231224', 'forward'], ['AJ231225', 'forward'], ['AJ231226', 'forward'], ['AJ231228', 'forward'], ['AJ231229', 'forward'], ['AJ231231', 'forward'], ['AJ231234', 'forward'], ['AJ231241', 'forward'], ['AJ231243', 'forward'], ['AJ231244', 'forward'], ['AJ231247', 'forward'], ['AJ231248', 'forward'], ['AJ231250', 'forward'], ['AJ231256', 'forward'], ['AJ231258', 'forward'], ['AJ231259', 'forward'], ['AJ231263', 'forward'], ['AJ231264', 'forward'], ['AJ231269', 'forward'], ['AJ231273', 'forward'], ['AJ231274', 'forward'], ['AJ235935', 'forward'], ['AJ235936', 'forward'], ['AJ235938', 'forward'], ['AJ235940', 'forward'], ['AJ235942', 'forward'], ['AJ235943', 'forward'], ['AJ235944', 'forward'], ['AJ235946', 'forward'], ['AJ235947', 'forward'], ['AJ235948', 'forward'], ['AJ235949', 'forward'], ['AJ235950', 'forward'], ['AJ235951', 'forward'], ['AJ235953', 'forward'], ['AJ235956', 'forward'], ['AJ235958', 'forward'], ['AJ235961', 'forward'], ['AJ235962', 'forward'], ['AJ235963', 'forward'], ['AJ235964', 'forward'], ['AJ235966', 'forward'], ['AJ235967', 'forward'], ['AJ235968', 'forward'], ['AJ235973', 'forward'], ['AJ235974', 'forward'], ['AJ239197', 'forward'], ['AJ239198', 'forward'], ['D00080', 'forward'], ['D00081', 'forward'], ['D00082', 'forward'], ['D13199', 'forward'], ['D13199', 'reverse'], ['J00431', 'forward'], ['J00431', 'reverse'], ['J00432', 'forward'], ['J00432', 'reverse'], ['J00433', 'forward'], ['J00433', 'reverse'], ['J00434', 'forward'], ['J00434', 'reverse'], ['J00435', 'forward'], ['J00435', 'reverse'], ['J00436', 'forward'], ['J00436', 'reverse'], ['J00437', 'forward'], ['J00437', 'reverse'], ['J00438', 'forward'], ['J00438', 'reverse'], ['J00439', 'forward'], ['J00439', 'reverse'], ['J00440', 'forward'], ['J00440', 'reverse'], ['J00545', 'forward'], ['J00562', 'forward'], ['J00583', 'reverse'], ['J00593', 'reverse'], ['K00884', 'forward'], ['K02158', 'forward'], ['K02159', 'forward'], ['K02160', 'forward'], ['K02161', 'forward'], ['K02162', 'forward'], ['K02418', 'forward'], ['K02802', 'reverse'], ['L32868', 'forward'], ['L32868', 'reverse'], ['M14360', 'forward'], ['M15520', 'forward'], ['M23243', 'reverse'], ['M28132', 'forward'], ['M28134', 'forward'], ['M35332', 'forward'], ['M35332', 'reverse'], ['M38103', 'reverse'], ['M38105', 'reverse'], ['M54906', 'forward'], ['M60955', 'reverse'], ['M60961', 'reverse'], ['M64239', 'reverse'], ['V00813', 'reverse'], ['V01563', 'forward'], ['V01564', 'forward'], ['V01565', 'forward'], ['X00933', 'reverse'], ['X00934', 'reverse'], ['X01018', 'reverse'], ['X02843', 'reverse'], ['X02858', 'reverse'], ['X02859', 'reverse'], ['X02862', 'reverse'], ['X03056', 'reverse'], ['X03057', 'reverse'], ['X03058', 'reverse'], ['X03059', 'reverse'], ['X03761', 'reverse'], ['X05502', 'reverse'], ['X16954', 'forward'], ['X16955', 'forward'], ['X17177', 'reverse'], ['X17179', 'reverse'], ['X58411', 'reverse'], ['X58414', 'reverse'], ['Y15968', 'forward'], ['Y15972', 'forward'], ['Y15975', 'forward'], ['Y15976', 'forward'], ['Y15977', 'forward'], ['Y15978', 'forward'], ['Y15980', 'forward'], ['Y15981', 'forward'], ['Y15982', 'forward'], ['Z72382', 'forward'], ['Z72384', 'forward']]
 
     subset: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27]