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Faheem Mitha  committed 7c16258

Rewrite neglogpp figure caption. Fix reference to neglogpp tables.

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  • Parent commits 68d98b0

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 \setlength{\abovecaptionskip}{0pt}
 
+\DeclareMathOperator{\G}{\mathcal{G}}
+\DeclareMathOperator{\Gc}{\mathcal{G}^{\mathsf{c}}}
+\DeclareMathOperator{\Lt}{\mathcal{L}}
+\DeclareMathOperator{\Lp}{\mathcal{L}^{\prime}}
 \DeclareMathOperator{\Multinom}{Multinom}
 \DeclareMathOperator{\M}{\mathcal{M}}
 \DeclareMathOperator{\p}{\mathbf{p}}
+\DeclareMathOperator{\q}{\mathbf{q}}
 \DeclareMathOperator{\Si}{\mathbf{S}_i}
+\DeclareMathOperator{\set}{\mathbf{S}}
 \DeclareMathOperator{\X}{\mathbf{X}}
 \DeclareMathOperator{\x}{\mathbf{x}}
 \DeclareMathOperator{\Y}{\mathbf{Y}}
 \subsection{Doing prediction on nucleotide sequence data sets}\label{testbio}
 \newcommand{\neglogppcaption}[2] {%
   These plots show how well the model predicts #1 12 RSS
-  sequences. The panels labelled 0 to 4 correspond to 5 different
-  training sets, each $4/5th$ of the RSS. The values calculated are
-  the negative log of the posterior predictive probabilities of all
-  sequences of length 28. Each panel corresponds to a training set,
-  and shows the highest ranked 40 values, excluding the sequences in
-  the training set, with the green lines corresponding to RSS
-  sequences. The panel labelled COMBINED shows the highest ranked 200
-  averaged values, where the values are averaged across the training
-  sets. See also the discussion in Section~\ref{testbio}, and
-  Table~\ref{#2} for numerical results.}
+  sequences. The panels labelled 0 to 4 correspond to 5
+  cross-validation processes comprising one cross-validation
+  round, as discussed in Section~\ref{testbio}.
+  Each panel shows the highest ranked 40 neglogpp values in $\Lp$ with
+  the green lines corresponding to known RSS sequences in $\G$. Table~\ref{#2} gives
+  numerical results for the same cross-validation round.}
 
 \makefigure{neglogpphuman}{Figure5-neglogpphuman}{NEGLOGPPHUMAN}{%
-  \neglogppcaption{human}{neglogpphuman}
+  \neglogppcaption{human}{neglogpphumantab}
   %
 }
 
 \makefigure{neglogppmouse}{Figure6-neglogppmouse}{NEGLOGPPMOUSE}{%
-  \neglogppcaption{mouse}{neglogppmouse}
+  \neglogppcaption{mouse}{neglogppmousetab}
   %
 }