Commits

Author Commit Message Labels Comments Date
Faheem Mitha
Add "Model search" subsection.
Faheem Mitha
Change get-orig-source target to using `python setup.py sdist`.
Faheem Mitha
Branch merge with debian.
Faheem Mitha
Override default sdist with CustomSdist class to build orig tarball.
Faheem Mitha
Remove debian/get-orig-source.
Branches
debian
Faheem Mitha
Speed up database loading.
Faheem Mitha
* write_data_file: Remove.
Faheem Mitha
Add 'id' as an argument to the Gene class, corresponding to the gene table.
Faheem Mitha
Remove 'startpos' and 'endpos' from write_data_file_partial. Rename to write_data_file. Function now processes entire gene.
Faheem Mitha
Throw error if stated model length is smaller than actual (incomplete) model length.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Check that the data frames True, Sim, and Data are not empty in 'get_stat'.
Faheem Mitha
Bugfix in load_sequence_dataset. Forgot to check for simulated = 'f' in conditional.
Faheem Mitha
Typo fix in make_sequencestatgroup_table docstring.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Add score column to crossval table.
Faheem Mitha
simann: Check that method string is correct.
Faheem Mitha
Add 'search' boolean column to Crossvalgroup table. Change constraint
Faheem Mitha
Bugfix in crossval function.
Faheem Mitha
Correctly specify location of local 'default_conf.yaml'.
Faheem Mitha
Add comments to linsplit::method. Exit from simann is model has length <= 1.
Faheem Mitha
On second thoughts, per Jarod42's suggestion in http://stackoverflow.com/a/24530120/350713,
Faheem Mitha
Remove template names to make clang happy. See http://stackoverflow.com/q/24527433/350713
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Use title and caption in the script to reflect usage.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Reduce column lengths.
Faheem Mitha
Replace forward with F, and reverse with R in genetable. Add brief explanation to caption.
Faheem Mitha
Change cm-datafiletable to cm-genetable.
Branches
debian
Faheem Mitha
Branch merge with default.
Branches
debian
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