Commits

Author Commit Message Labels Comments Date
Faheem Mitha
Merge with default
Branches
debian
Faheem Mitha
Fix the facet labels which were going outside the box, by creating stat_labeller function to split labels across two lines with 'atop'.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Bugfix for loops in gendatamethod::gendata and gen_dirichlet_fixedprob::gendata (flagged by Clang 3.4).
Faheem Mitha
Compile executables with Clang 3.4 as well.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Add MANUAL.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Various fixes to sim load functions.
Faheem Mitha
Set default for --empty-model in 'all_sim' and 'all_sim_parallel' to be True.
Faheem Mitha
Add some comments.
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Change 'sequencegroup_id' column in simgroup table to 'id'. Remove comments at bottom.
Faheem Mitha
Fixes to debian/get-orig-source. The script now figures out the
Branches
debian
Faheem Mitha
Add revision number of default branch tip to version number.
Branches
debian
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
load.py:
Faheem Mitha
Branch merge with default.
Branches
debian
Faheem Mitha
Add override_dh_clean target to remove figures.prv directory.
Branches
debian
Faheem Mitha
Add LaTeX file containing figures from the corrmodel paper.
Faheem Mitha
Merge with default.
Branches
debian
Faheem Mitha
simdata, all_sim, all_sim_parallel: Add mutually exclusive options
Faheem Mitha
Fix indentation.
Faheem Mitha
Add 'default_model' config value for use with sim data.
Faheem Mitha
* create_db: The 'default_model' config value is now returned as part
Faheem Mitha
Add debian/clean file for files to clean.
Branches
debian
Faheem Mitha
Switch source format from native to quilt.
Branches
debian
Faheem Mitha
Add get-orig-source target to rules.
Branches
debian
Faheem Mitha
Merge with default.
Branches
debian
Faheem Mitha
load_motif_dataset: Look for motif fasta file in 'datadir' (as defined in the config file).
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