HDF5 files reading error
On Ubuntu 20.04, gcc9.2
Error looks very similar to the one in Issue 107: https://bitbucket.org/fathomteam/moab/issues/107/segmentation-fault-when-reading-hdf5-file
These 5 tests fail:
FAIL: scdpart
FAIL: read_nc_par
FAIL: ucdtrvpart
FAIL: mpastrvpart
FAIL: write_nc_par
Mostly pointing to: [0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp [0]MOAB ERROR: NULL file handle.!
see detailed error below:
jain@jain:~/projects/buildmoab_gcc92/test/parallel$ ./read_nc_par
Running test_read_eul_all ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/eul3x48x96.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 84 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_eul_all: FAILED
Running test_read_eul_onevar ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/eul3x48x96.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 111 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_eul_onevar: FAILED
Running test_read_eul_onetimestep ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/eul3x48x96.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 194 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_eul_onetimestep: FAILED
Running test_read_eul_nomesh ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/eul3x48x96.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 217 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_eul_nomesh: FAILED
Running test_read_eul_novars ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/eul3x48x96.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 247 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_eul_novars: FAILED
Running test_read_domain ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/domain.ocn.ne4np4_oQU240.160614.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 510 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_domain: FAILED
Running test_read_fv_onevar ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/fv3x46x72.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 300 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_fv_onevar: FAILED
Running test_read_fv_onetimestep ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/fv3x46x72.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 383 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_fv_onetimestep: FAILED
Running test_read_fv_nomesh ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/fv3x46x72.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 414 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_fv_nomesh: FAILED
Running test_read_fv_novars ...
0 H5M H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS is not defined
0 H5M (0.00 s) Getting file summary
0 H5M (0.00 s) Communicating file summary
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/fv3x46x72.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 444 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_fv_novars: FAILED
Running test_read_fv_ghosting ...
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: NULL file handle.!
[0]MOAB ERROR: is_error() line 125 in src/io/ReadHDF5.hpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for IDEAS!
[0]MOAB ERROR: load_file() line 40 in src/io/ReadIDEAS.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for meshtal!
[0]MOAB ERROR: load_file() line 75 in src/io/ReadMCNP5.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for NASTRAN!
[0]MOAB ERROR: load_file() line 74 in src/io/ReadNASTRAN.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for ABAQUS data!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadABAQUS.cpp
Subset reading not supported for RTT meshes
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 194 in src/io/ReadVtk.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for OBJ.!
[0]MOAB ERROR: load_file() line 126 in src/io/ReadOBJ.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for Sms!
[0]MOAB ERROR: load_file() line 80 in src/io/ReadSms.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for CUB files!
[0]MOAB ERROR: load_file() line 305 in src/io/Tqdcfr.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for VTK!
[0]MOAB ERROR: load_file() line 122 in src/io/ReadSmf.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Parsing error at line 1: expected one of { $NOD $MeshFormat } got "CDF"!
[0]MOAB ERROR: match_token() line 367 in src/io/FileTokenizer.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for STL!
[0]MOAB ERROR: load_file() line 73 in src/io/ReadSTL.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Reading subset of files not supported for TetGen!
[0]MOAB ERROR: load_file() line 71 in src/io/ReadTetGen.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: /home/jain/projects/buildmoab_gcc92/../moab/MeshFiles/unittest/io/fv3x46x72.t.3.nc: Trouble reading vertices!
[0]MOAB ERROR: read_vertices() line 131 in src/io/ReadTemplate.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed to load file after trying all possible readers!
[0]MOAB ERROR: serial_load_file() line 578 in src/Core.cpp
[0]MOAB ERROR: --------------------- Error Message ------------------------------------
[0]MOAB ERROR: Failed in step PARALLEL READ PART!
[0]MOAB ERROR: load_file() line 585 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 252 in src/ReadParallel.cpp
[0]MOAB ERROR: load_file() line 453 in src/Core.cpp
ErrorCode Test Failed: MB_SUCCESS == rval
at line 485 of '../../../moab/test/parallel/../io/read_nc.cpp'
Expected value: Success (0)
Actual value: Failure (16)
test_read_fv_ghosting: FAILED
Comments (7)
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-
reporter No. This is using spack packages on a fresh Ubuntu 20.04.
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Can you verify if you HDF5 and NetCDF installations are parallel enabled ? Also, attach MOAB config.log
-
reporter - attached config.log
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reporter jain @ jain ~/projects/buildmoab_gcc92/test/parallel
└─ $ ▶ ldd read_nc_par |grep hdf
libhdf5_hl.so.100 => /home/jain/.spack/Spack/opt/spack/linux-ubuntu20.04-skylake/gcc-9.2.0/hdf5-1.10.7-43w22plx2xpgchr56rs55ynszznbrtbw//lib/libhdf5_hl.so.100 (0x00007f49f0d4f000)
libhdf5.so.103 => /home/jain/.spack/Spack/opt/spack/linux-ubuntu20.04-skylake/gcc-9.2.0/hdf5-1.10.7-43w22plx2xpgchr56rs55ynszznbrtbw//lib/libhdf5.so.103 (0x00007f49f0995000)jain @ jain ~/projects/buildmoab_gcc92/test/parallel
└─ $ ▶ ldd read_nc_par |grep net
libpnetcdf.so.4 => /home/jain/.spack/Spack/opt/spack/linux-ubuntu20.04-skylake/gcc-9.2.0/parallel-netcdf-1.12.2-cfrxwz72bcygsjss2er557dwori5g6lg//lib/libpnetcdf.so.4 (0x00007fd4272d2000)
hdf5 uses openmpi@4.1.1
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Is this resolved? Or is this still a problem? @Rajeev Jain @Iulian Grindeanu
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reporter - changed status to resolved
It has been awhile, but it seems this is now working.
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@Rajeev Jain @Iulian Grindeanu Is this something GCE related ?