Commits

Flávio Coelho  committed 40eff44

Added more types of Epidemic models

  • Participants
  • Parent commits c99c891

Comments (0)

Files changed (2)

File EpidemicModeling/EpidemicModeling.owl

 
 
 <Ontology xmlns="http://www.w3.org/2002/07/owl#"
-     xml:base="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl"
+     xml:base="https://bitbucket.org/fccoelho/math-model-ontology/raw/tip/EpidemicModeling/EpidemicModeling.owl"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:xml="http://www.w3.org/XML/1998/namespace"
-     ontologyIRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl">
+     ontologyIRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/tip/EpidemicModeling/EpidemicModeling.owl">
     <Prefix name="xsd" IRI="http://www.w3.org/2001/XMLSchema#"/>
     <Prefix name="owl" IRI="http://www.w3.org/2002/07/owl#"/>
     <Prefix name="" IRI="http://www.w3.org/2002/07/owl#"/>
         <Class IRI="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Epidemic_Model"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Air_borne"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Air_borne"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Birth_rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Birth_rate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Climate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Climate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Death_rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Death_rate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Direct_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Direct_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#ENSO"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#ENSO"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#External_forces"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Fecal-oral_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Fecal-oral_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Force_of_infection"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Force_of_infection"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Host"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Host"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Humidity"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Humidity"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Immunological_State"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Incubation_period"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Incubation_period"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Indirect_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Indirect_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Infected"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Infected"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Latent"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Latent"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Life_History_Transition_Rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Life_expectancy"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_expectancy"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Mass_action"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mass_action"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Mathematical_Epidemiology"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Mathematical_Epidemiology_Core_Concepts"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology_Core_Concepts"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Oral_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Oral_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Pathogen"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Pathogen"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Rainfall"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Rainfall"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Recovered"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovered"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Recovery_rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovery_rate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Removed"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Removed"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Seasonality"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Seasonality"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Sexual_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Sexual_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Susceptible"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Susceptible"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Temperature"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Temperature"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Transmission_mechanism"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Transmission_mechanism"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Transmission_rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Transmission_rate"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Vector"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vector"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Vector_borne"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vector_borne"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Vertical_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vertical_transmission"/>
     </Declaration>
     <Declaration>
-        <Class IRI="#Water_borne"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Water_borne"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Adams2006"/>
+        <Class IRI="#SEI"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Adams_B"/>
+        <Class IRI="#SEIR"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Boots_M"/>
+        <Class IRI="#SEIS"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Holmes_EC"/>
+        <Class IRI="#SIRS"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Kalayanarooj_S"/>
+        <Class IRI="#SIS"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Mammen_MP_Jr"/>
+        <Class IRI="#Susceptible_Infected"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Nimmannitya_S"/>
+        <ObjectProperty IRI="#hasImmunologicalState"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Proceedings_of_the_National_Academy_of_Sciences_of_the_United_States_of_America"/>
+        <NamedIndividual IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Adams2006"/>
     </Declaration>
     <Declaration>
-        <NamedIndividual IRI="#Zhang_C"/>
+        <NamedIndividual IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Adams_B"/>
+    </Declaration>
+    <Declaration>
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+    </Declaration>
+    <Declaration>
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+    </Declaration>
+    <Declaration>
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+    </Declaration>
+    <Declaration>
+        <NamedIndividual IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mammen_MP_Jr"/>
+    </Declaration>
+    <Declaration>
+        <NamedIndividual IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Nimmannitya_S"/>
+    </Declaration>
+    <Declaration>
+        <NamedIndividual IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Proceedings_of_the_National_Academy_of_Sciences_of_the_United_States_of_America"/>
+    </Declaration>
+    <Declaration>
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     </Declaration>
     <EquivalentClasses>
-        <Class IRI="#Recovered"/>
-        <Class IRI="#Removed"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovered"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Removed"/>
     </EquivalentClasses>
     <SubClassOf>
         <Class IRI="http://www.co-ode.org/ontologies/ont.owl#Modelling_Domain"/>
         <Class IRI="http://www.co-ode.org/ontologies/ont.owl#Dynamic_Model"/>
     </SubClassOf>
     <SubClassOf>
+        <Class IRI="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Epidemic_Model"/>
+        <ObjectSomeValuesFrom>
+            <ObjectProperty IRI="http://mapekus.fiit.stuba.sk/mapekus/ontologies/v0.2/publication#contains"/>
+            <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
+        </ObjectSomeValuesFrom>
+    </SubClassOf>
+    <SubClassOf>
         <Class IRI="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered"/>
         <Class IRI="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Epidemic_Model"/>
     </SubClassOf>
         <ObjectAllValuesFrom>
             <ObjectProperty IRI="http://www.obofoundry.org/ro/ro.owl#contains"/>
             <ObjectIntersectionOf>
-                <Class IRI="#Infected"/>
-                <Class IRI="#Recovered"/>
-                <Class IRI="#Susceptible"/>
+                <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Infected"/>
+                <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovered"/>
+                <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Susceptible"/>
             </ObjectIntersectionOf>
         </ObjectAllValuesFrom>
     </SubClassOf>
     <SubClassOf>
-        <Class IRI="#Air_borne"/>
-        <Class IRI="#Indirect_transmission"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Air_borne"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Indirect_transmission"/>
     </SubClassOf>
     <SubClassOf>
-        <Class IRI="#Birth_rate"/>
-        <Class IRI="#Life_History_Transition_Rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Birth_rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
     </SubClassOf>
     <SubClassOf>
-        <Class IRI="#Climate"/>
-        <Class IRI="#External_forces"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Climate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces"/>
     </SubClassOf>
     <SubClassOf>
-        <Class IRI="#Death_rate"/>
-        <Class IRI="#Life_History_Transition_Rate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Death_rate"/>
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     <SubClassOf>
-        <Class IRI="#Direct_transmission"/>
-        <Class IRI="#Transmission_mechanism"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Direct_transmission"/>
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     <SubClassOf>
-        <Class IRI="#ENSO"/>
-        <Class IRI="#Climate"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#ENSO"/>
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-        <Class IRI="#External_forces"/>
-        <Class IRI="#Mathematical_Epidemiology_Core_Concepts"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces"/>
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     <SubClassOf>
-        <Class IRI="#Fecal-oral_transmission"/>
-        <Class IRI="#Indirect_transmission"/>
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     <SubClassOf>
-        <Class IRI="#Force_of_infection"/>
-        <Class IRI="#Life_History_Transition_Rate"/>
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     <SubClassOf>
-        <Class IRI="#Host"/>
-        <Class IRI="#Mathematical_Epidemiology_Core_Concepts"/>
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     <SubClassOf>
-        <Class IRI="#Humidity"/>
-        <Class IRI="#Climate"/>
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-        <Class IRI="#Immunological_State"/>
-        <Class IRI="#Mathematical_Epidemiology_Core_Concepts"/>
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-        <Class IRI="#Incubation_period"/>
-        <Class IRI="#Life_History_Transition_Rate"/>
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-        <Class IRI="#Transmission_mechanism"/>
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-        <Class IRI="#Immunological_State"/>
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     <SubClassOf>
-        <Class IRI="#Latent"/>
-        <Class IRI="#Immunological_State"/>
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     <SubClassOf>
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+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vector"/>
+    </ObjectPropertyDomain>
+    <ObjectPropertyRange>
+        <ObjectProperty IRI="#hasImmunologicalState"/>
+        <Class IRI="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
+    </ObjectPropertyRange>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
         <IRI>http://mapekus.fiit.stuba.sk/mapekus/ontologies/v0.2/publication#Article</IRI>
         <Literal datatypeIRI="&xsd;anyURI">http://en.wikipedia.org/wiki/Epidemic_model</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
-        <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered</IRI>
-        <Literal datatypeIRI="&rdf;PlainLiteral">Susceptible_Infected_Recovereds</Literal>
-    </AnnotationAssertion>
-    <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
         <IRI>http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Susceptible_Infected_Recovered</Literal>
     R(t) is the compartment used for those individuals who have been infected and then recovered from the disease. Those in this category are not able to be infected again or to transmit the infection to others.</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
+        <AnnotationProperty IRI="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
+        <IRI>http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered</IRI>
+        <Literal datatypeIRI="&xsd;string">Susceptible Infected Recovered</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered</IRI>
+        <Literal datatypeIRI="&xsd;string">SIR</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Adams2006</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Adams2006</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Adams2006</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Adams_B</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Adams_B</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Adams_B</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Air_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Air_borne</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Air_bornes</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Air_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Air_borne</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Air_borne</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Air_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Air_borne</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Also known as the respiratory route, it is a typical mode of transmission among many infectious agents. If an infected person coughs or sneezes on another person the microorganisms, suspended in warm, moist droplets, may enter the body through the nose, mouth or eye surfaces. </Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Birth_rate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Birth_rate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Birth_rates</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Birth_rate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Birth_rate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Birth_rate</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Boots_M</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Boots_M</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Boots_M</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Climate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Climate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Climates</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Climate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Climate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Climate</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Death_rate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Death_rate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Death_rates</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
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-        <IRI>#Death_rate</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Death_rate</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Death_rate</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Direct_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Direct_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Direct_transmissions</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Direct_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Direct_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Direct_transmission</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#ENSO</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#ENSO</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">ENSOes</Literal>
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     <AnnotationAssertion>
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-        <IRI>#ENSO</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#ENSO</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">ENSO</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
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-        <IRI>#ENSO</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">El Niño/La Niña-Southern Oscillation, or ENSO, is a quasiperiodic climate pattern that occurs across the tropical Pacific Ocean roughly every five years. </Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://www.geneontology.org/formats/oboInOwl#hasURI"/>
-        <IRI>#ENSO</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#ENSO</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">http://en.wikipedia.org/wiki/ENSO</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#External_forces</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">External_forceses</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
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-        <IRI>#External_forces</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">External_forces</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#External_forces</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Variables that are external to the system, that influence its dynamics. Climate is the most common natural external forcing of epidemic models</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Fecal-oral_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Fecal-oral_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Fecal-oral_transmissions</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Fecal-oral_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Fecal-oral_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Fecal-oral_transmission</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Fecal-oral_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Fecal-oral_transmission</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Direct contact is rare in this route, for humans at least. More common are the indirect routes; foodstuffs or water become contaminated (by people not washing their hands before preparing food, or untreated sewage being released into a drinking water supply) and the people who eat and drink them become infected. In developing countries most sewage is discharged into the environment or on cropland as of 2006; even in developed countries there are periodic system failures resulting in a sanitary sewer overflow.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Force_of_infection</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Force_of_infection</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Force_of_infections</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Force_of_infection</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Force_of_infection</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Force_of_infection</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Force_of_infection</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Force_of_infection</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">rate at which susceptible individuals become infected</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Holmes_EC</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Holmes_EC</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Holmes_EC</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Host</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Host</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Hosts</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Host</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Host</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Host</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Host</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Host</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Organism which harbors a parasite, pathogen, or a mutual or commensal symbiont, typically providing nourishment and shelter.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Humidity</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Humidity</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Humidities</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Humidity</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Humidity</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Immunological_State</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Immunological_States</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Immunological_State</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Immunological_State</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Immunological_State</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Possible Immunological states of  individuals in an epidemic model.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty abbreviatedIRI="rdfs:seeAlso"/>
-        <IRI>#Immunological_State</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State</IRI>
         <Literal datatypeIRI="&xsd;anyURI">http://en.wikipedia.org/wiki/Epidemic_model</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Incubation_period</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Incubation_period</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Incubation_periods</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Incubation_period</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Incubation_period</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Incubation_period</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Incubation_period</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Incubation_period</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">average period between the momment of infection and the begining of the infectious period</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Indirect_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Indirect_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Indirect_transmissions</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Indirect_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Indirect_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Indirect_transmission</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Infected</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Infected</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Infecteds</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Infected</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Infected</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Infected</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Infected</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Denotes individuals who have been infected with the disease and are capable of spreading the disease to those in the susceptible category</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Kalayanarooj_S</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Kalayanarooj_S</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Latent</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Latents</Literal>
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-        <IRI>#Latent</IRI>
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-        <IRI>#Latent</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">denotes individuals who have been infected with the disease and are still not capable of spreading the disease to those in the susceptible category</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Life_History_Transition_Rate</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Life_History_Transition_Rates</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Life_History_Transition_Rate</IRI>
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-        <IRI>#Life_History_Transition_Rate</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Transition rates between immunological or developmental states.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Life_expectancy</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Life_expectancies</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Life_expectancy</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Life_expectancy</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Life_expectancy</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Expected (in the statistical sense) number of years of life remaining at a given age</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Mammen_MP_Jr</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Mammen_MP_Jr</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Mass_action</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Mass_actions</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Mass_action</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Mass_action</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Mathematical_Epidemiology</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Mathematical_Epidemiologies</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Mathematical_Epidemiology</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Mathematical_Epidemiology</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Nimmannitya_S</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Nimmannitya_S</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Oral_transmission</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Oral_transmissions</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Oral_transmission</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Oral_transmission</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Oral_transmission</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Diseases that are transmitted primarily by oral means may be caught through direct oral contact such as kissing, or by indirect contact such as by sharing a drinking glass or a cigarette.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Pathogen</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Pathogens</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Pathogen</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Pathogen</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Pathogen</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Causative agent of the disease</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Proceedings_of_the_National_Academy_of_Sciences_of_the_United_States_of_America</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Proceedings_of_the_National_Academy_of_Sciences_of_the_United_States_of_America</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Rainfall</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Rainfalls</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Rainfall</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Rainfall</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Recovered</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Recovereds</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Recovered</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Recovered</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Recovered</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Is the compartment used for those individuals who have been infected and then recovered from the disease.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Recovery_rate</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Recovery_rates</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Recovery_rate</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Recovery_rate</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Recovery_rate</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">rate at individuals recover from infection becoming non infective</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Removed</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Removeds</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Removed</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Removed</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Removed</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Is the compartment used for those individuals who have been infected and then recovered from the disease.</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Seasonality</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Seasonalities</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Seasonality</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Seasonality</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Sexual_transmission</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Sexual_transmissions</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Sexual_transmission</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Sexual_transmission</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Sexual_transmission</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">This refers to any disease that can be caught during sexual activity with another person, including vaginal or anal sex or (less commonly) through oral sex </Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Susceptible</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Susceptibles</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Susceptible</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Susceptible</Literal>
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     <AnnotationAssertion>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Represent individuals not yet infected with the disease at time t, or those susceptible to the disease</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Temperature</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Temperatures</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Temperature</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Temperature</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Transmission_mechanism</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Transmission_mechanisms</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Transmission_mechanism</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Transmission_mechanism</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Transmission_mechanism</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Routes of disease transmission</Literal>
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         <AnnotationProperty abbreviatedIRI="rdfs:seeAlso"/>
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         <Literal datatypeIRI="&xsd;anyURI">http://en.wikipedia.org/wiki/Disease_transmission#Routes_of_Transmission</Literal>
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-        <IRI>#Transmission_rate</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Transmission_rates</Literal>
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     <AnnotationAssertion>
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-        <IRI>#Transmission_rate</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Transmission_rate</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Transmission_rate</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">the effective contact rate between susceptible and infected </Literal>
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     <AnnotationAssertion>
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-        <IRI>#Vector</IRI>
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         <Literal datatypeIRI="&rdf;PlainLiteral">Vectors</Literal>
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-        <IRI>#Vector</IRI>
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-        <IRI>#Vector</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">an organism, often an invertebrate arthropod, that transmits a pathogen from reservoir to host</Literal>
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-        <IRI>#Vector_borne</IRI>
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         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Transmitted by a vector</Literal>
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     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Vertical_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vertical_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Vertical_transmissions</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Vertical_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vertical_transmission</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Vertical_transmission</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Vertical_transmission</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Vertical_transmission</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">This is from mother to child, often in utero or during childbirth (also referred to as perinatal infection). It occurs more rarely via breast milk.</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_pl"/>
-        <IRI>#Water_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Water_borne</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Water_bornes</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#CN_sg"/>
-        <IRI>#Water_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Water_borne</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Water_borne</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
-        <IRI>#Water_borne</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Water_borne</IRI>
         <Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Contaminated water serves as a vehicle for the pathogen access to the host</Literal>
     </AnnotationAssertion>
     <AnnotationAssertion>
         <AnnotationProperty IRI="http://attempto.ifi.uzh.ch/ace_lexicon#PN_sg"/>
-        <IRI>#Zhang_C</IRI>
+        <IRI>https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Zhang_C</IRI>
         <Literal datatypeIRI="&rdf;PlainLiteral">Zhang_C</Literal>
     </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#SEI</IRI>
+        <Literal datatypeIRI="&rdf;PlainLiteral">The SEI model takes into consideration the exposed or latent period of the disease, giving an additional compartment to the SI model, E(t). In this model there is no recovery.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#SEIR</IRI>
+        <Literal datatypeIRI="&xsd;string">The SIR model discussed above takes into account only those diseases which cause an individual to be able to infect others immediately upon their infection. Many diseases have what is termed a latent or exposed phase, during which the individual is said to be infected but not infectious.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
+        <IRI>#SEIR</IRI>
+        <Literal datatypeIRI="&xsd;string">Susceptible Exposed Infected Recovered</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#SEIS</IRI>
+        <Literal datatypeIRI="&rdf;PlainLiteral">The SEIS model takes into consideration the exposed or latent period of the disease, giving an additional compartment, E(t). In this model an infection does not leave a long lasting immunity thus individuals that have recovered return to being susceptible again, moving back into the S(t) compartment.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#SIRS</IRI>
+        <Literal datatypeIRI="&rdf;PlainLiteral">This model is simply an extension of the SIR model. The only difference is that it allows members of the recovered class to be free of infection and rejoin the susceptible class.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#SIS</IRI>
+        <Literal datatypeIRI="&xsd;string">The SIS model can be easily derived from the SIR model by simply considering that the individuals recover with no immunity to the disease, that is, individuals are immediately susceptible once they have recovered.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
+        <IRI>#SIS</IRI>
+        <Literal datatypeIRI="&xsd;string">Susceptible Infected Susceptible</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/terms/description"/>
+        <IRI>#Susceptible_Infected</IRI>
+        <Literal datatypeIRI="&xsd;string">The SI model can be easily derived from the SIR model by simply considering that the individuals never recover.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
+        <IRI>#Susceptible_Infected</IRI>
+        <Literal datatypeIRI="&xsd;string">Susceptible Infected</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>#Susceptible_Infected</IRI>
+        <Literal datatypeIRI="&xsd;string">SI</Literal>
+    </AnnotationAssertion>
 </Ontology>
 
 

File EpidemicModeling/catalog-v001.xml

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+        <uri id="Automatically generated entry, Timestamp=1336739533783" name="https://bitbucket.org/fccoelho/math-model-ontology/raw/tip/EpidemicModeling/EpidemicModeling.owl" uri="EpidemicModeling.owl"/>
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