Commits

Flávio Coelho committed b724e32

small fixes to epidemic modeling

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Files changed (3)

EpidemicModeling/EpidemicModeling.rdf

     ///////////////////////////////////////////////////////////////////////////////////////
      -->
 
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+    <AnnotationProperty rdf:about="&ace_lexicon;TV_vbg"/>
     
 
 
     
 
 
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+
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+    
+
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     <!-- http://mapekus.fiit.stuba.sk/mapekus/ontologies/v0.2/publication#isAuthorOf -->
 
     <rdf:Description rdf:about="&publication;isAuthorOf">
 
     <!-- http://www.co-ode.org/ontologies/ont.owl#Modelling_Domain -->
 
-    <rdf:Description rdf:about="http://www.co-ode.org/ontologies/ont.owl#Modelling_Domain">
+    <Class rdf:about="http://www.co-ode.org/ontologies/ont.owl#Modelling_Domain">
         <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
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-        <ace_lexicon:CN_sg>Modelling_Domain</ace_lexicon:CN_sg>
-    </rdf:Description>
+    </Class>
     
 
 
             </Restriction>
         </rdfs:subClassOf>
         <rdfs:seeAlso rdf:datatype="&xsd;anyURI">http://en.wikipedia.org/wiki/Epidemic_model</rdfs:seeAlso>
-        <ace_lexicon:CN_pl>Epidemic_Models</ace_lexicon:CN_pl>
         <rdfs:comment>An Epidemic model describes the transmission of communicable disease through individuals</rdfs:comment>
-        <ace_lexicon:CN_sg>Epidemic_Model</ace_lexicon:CN_sg>
     </Class>
     
 
 
     <!-- http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered -->
 
-    <Class rdf:about="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered">
-        <rdfs:label rdf:datatype="&xsd;string">SIR</rdfs:label>
+    <rdf:Description rdf:about="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Susceptible_Infected_Recovered">
         <rdfs:subClassOf rdf:resource="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Epidemic_Model"/>
         <rdfs:subClassOf>
             <Restriction>
     S(t) is used to represent the number of individuals not yet infected with the disease at time t, or those susceptible to the disease
     I(t) denotes the number of individuals who have been infected with the disease and are capable of spreading the disease to those in the susceptible category
     R(t) is the compartment used for those individuals who have been infected and then recovered from the disease. Those in this category are not able to be infected again or to transmit the infection to others.</dc:description>
-        <ace_lexicon:CN_sg>Susceptible_Infected_Recovered</ace_lexicon:CN_sg>
-    </Class>
+    </rdf:Description>
     
 
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Birth_rate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_pl>Birth_rates</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Birth_rate</ace_lexicon:CN_sg>
     </Class>
     
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Climate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces"/>
-        <ace_lexicon:CN_sg>Climate</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Climates</ace_lexicon:CN_pl>
     </Class>
     
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Death_rate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_pl>Death_rates</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Death_rate</ace_lexicon:CN_sg>
     </Class>
     
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Force_of_infection">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_sg>Force_of_infection</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Force_of_infections</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">rate at which susceptible individuals become infected</dc:description>
     </Class>
     
                 <someValuesFrom rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
             </Restriction>
         </rdfs:subClassOf>
-        <ace_lexicon:CN_sg>Host</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Hosts</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Organism which harbors a parasite, pathogen, or a mutual or commensal symbiont, typically providing nourishment and shelter.</dc:description>
     </Class>
     
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology_Core_Concepts"/>
         <rdfs:seeAlso rdf:datatype="&xsd;anyURI">http://en.wikipedia.org/wiki/Epidemic_model</rdfs:seeAlso>
-        <ace_lexicon:CN_pl>Immunological_States</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Immunological_State</ace_lexicon:CN_sg>
         <dc:description xml:lang="en">Possible Immunological states of  individuals in an epidemic model.</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Incubation_period">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_pl>Incubation_periods</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Incubation_period</ace_lexicon:CN_sg>
         <dc:description xml:lang="en">average period between the momment of infection and the begining of the infectious period</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Infected">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
-        <ace_lexicon:CN_sg>Infected</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Infecteds</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Denotes individuals who have been infected with the disease and are capable of spreading the disease to those in the susceptible category</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Latent">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
-        <ace_lexicon:CN_pl>Latents</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Latent</ace_lexicon:CN_sg>
         <dc:description xml:lang="en">denotes individuals who have been infected with the disease and are still not capable of spreading the disease to those in the susceptible category</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology_Core_Concepts"/>
-        <ace_lexicon:CN_sg>Life_History_Transition_Rate</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Life_History_Transition_Rates</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Transition rates between immunological or developmental states.</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_expectancy">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_pl>Life_expectancies</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Expected (in the statistical sense) number of years of life remaining at a given age</dc:description>
-        <ace_lexicon:CN_sg>Life_expectancy</ace_lexicon:CN_sg>
     </Class>
     
 
                 <someValuesFrom rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Mathematical_Epidemiology_Core_Concepts"/>
             </Restriction>
         </rdfs:subClassOf>
-        <ace_lexicon:CN_pl>Mathematical_Epidemiologies</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Mathematical_Epidemiology</ace_lexicon:CN_sg>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovered">
         <equivalentClass rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Removed"/>
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
-        <ace_lexicon:CN_pl>Recovereds</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Recovered</ace_lexicon:CN_sg>
         <dc:description xml:lang="en">Is the compartment used for those individuals who have been infected and then recovered from the disease.</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Recovery_rate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_pl>Recovery_rates</ace_lexicon:CN_pl>
-        <ace_lexicon:CN_sg>Recovery_rate</ace_lexicon:CN_sg>
         <dc:description xml:lang="en">rate at individuals recover from infection becoming non infective</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Removed">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
-        <ace_lexicon:CN_pl>Removeds</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Is the compartment used for those individuals who have been infected and then recovered from the disease.</dc:description>
-        <ace_lexicon:CN_sg>Removed</ace_lexicon:CN_sg>
     </Class>
     
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Seasonality">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#External_forces"/>
-        <ace_lexicon:CN_sg>Seasonality</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Seasonalities</ace_lexicon:CN_pl>
     </Class>
     
 
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Susceptible">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Immunological_State"/>
-        <ace_lexicon:CN_sg>Susceptible</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Susceptibles</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">Represent individuals not yet infected with the disease at time t, or those susceptible to the disease</dc:description>
     </Class>
     
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Transmission_rate">
         <rdfs:subClassOf rdf:resource="https://bitbucket.org/fccoelho/math-model-ontology/raw/795d675c89cd/EpidemicModeling/EpidemicModeling.owl#Life_History_Transition_Rate"/>
-        <ace_lexicon:CN_sg>Transmission_rate</ace_lexicon:CN_sg>
-        <ace_lexicon:CN_pl>Transmission_rates</ace_lexicon:CN_pl>
         <dc:description xml:lang="en">the effective contact rate between susceptible and infected </dc:description>
     </Class>
     
     <!-- https://bitbucket.org/fccoelho/math-model-ontology/raw/tip/EpidemicModeling/EpidemicModeling.owl#Susceptible_Infected -->
 
     <Class rdf:about="https://bitbucket.org/fccoelho/math-model-ontology/raw/tip/EpidemicModeling/EpidemicModeling.owl#Susceptible_Infected">
-        <rdfs:label rdf:datatype="&xsd;string">SI</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://www.semanticweb.org/ontologies/2011/4/MathModels.owl#Epidemic_Model"/>
         <rdfs:subClassOf>
             <Restriction>

EpidemicModeling/catalog-v001.xml

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Modeling Ontology/catalog-v001.xml

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