Lagrange multiplier example fails with num_threads

[Mike Welland]

Hi all,

Using lagrange multipliers seems to crash when using

parameters["num_threads"] = 3

For example, add that line to demo_neumann-poisson.py . The error I get is:

~~~~~~~~~~~~

Process: Python [76559] Path: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python Identifier: Python Version: ??? (???) Code Type: X86-64 (Native) Parent Process: bash [50994]

PlugIn Path: /Applications/FEniCS.app/Contents/Resources/lib/libdolfin.1.3.dylib PlugIn Identifier: libdolfin.1.3.dylib PlugIn Version: 1.3.0 (compatibility 1.3.0)

Date/Time: 2014-02-14 12:48:08.301 -0600 OS Version: Mac OS X 10.7.5 (11G63b) Report Version: 9 Sleep/Wake UUID: 502AC40B-5680-4DCE-973E-ADB7D4984272

Interval Since Last Report: 45990 sec Crashes Since Last Report: 18 Per-App Crashes Since Last Report: 18 Anonymous UUID: B1131B5E-B73C-4A6B-9560-46E2B3D8CC1C

Crashed Thread: 1

Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000

Application Specific Information: dyld: in dladdr() abort() called objc[76559]: garbage collection is OFF terminate called without an active exception

Thread 0:: Dispatch queue: com.apple.main-thread 0 dyld 0x00007fff60991705 ImageLoaderMachOCompressed::findClosestSymbol(void const, void const) const + 163 1 dyld 0x00007fff60985bc4 dladdr + 153 2 libdyld.dylib 0x00007fff91345c31 dladdr + 72 3 libsystem_c.dylib 0x00007fff8f7b2bb1 backtrace_symbols + 159 4 libmpi.1.dylib 0x00000001055db80a opal_backtrace_buffer + 58 5 libmpi.1.dylib 0x0000000105613b90 show_stackframe + 1344 6 libsystem_c.dylib 0x00007fff8f81acfa _sigtramp + 26 7 libsystem_kernel.dylib 0x00007fff8e20dce2 __pthread_kill + 10 8 libsystem_c.dylib 0x00007fff8f7c87d2 pthread_kill + 95 9 libsystem_c.dylib 0x00007fff8f7b9a7a abort + 143 10 libc++abi.dylib 0x00007fff9058d7bc abort_message + 214 11 libc++abi.dylib 0x00007fff9058afdd default_terminate() + 42 12 libstdc++.6.dylib 0x00007fff8ec7687b std::terminate() + 21 13 libdolfin.1.3.dylib 0x0000000101d7b7cc _ZN6dolfin15OpenMpAssembler14assemble_cellsERNS_13GenericTensorERKNS_4FormERNS_3UFCEPKNS_12MeshFunctionImEEPSt6vectorIdSaIdEE.omp_fn.2 + 1452 14 libdolfin.1.3.dylib 0x0000000101d7adc9 dolfin::OpenMpAssembler::assemble_cells(dolfin::GenericTensor&, dolfin::Form const&, dolfin::UFC&, dolfin::MeshFunction<unsigned long> const, std::vector<double, std::allocator<double> >*) + 2269 15 libdolfin.1.3.dylib 0x0000000101d7bb82 dolfin::OpenMpAssembler::assemble(dolfin::GenericTensor&, dolfin::Form const&) + 950 16 libdolfin.1.3.dylib 0x0000000101d341ed dolfin::Assembler::assemble(dolfin::GenericTensor&, dolfin::Form const&) + 171 17 libdolfin.1.3.dylib 0x0000000101d30b17 dolfin::assemble(dolfin::GenericTensor&, dolfin::Form const&) + 39 18 libdolfin.1.3.dylib 0x0000000101d6b8d0 dolfin::LinearVariationalSolver::solve() + 2192 19 _fem.so 0x0000000108fd27d4 _wrap_LinearVariationalSolver_solve + 452 20 org.python.python 0x0000000100e0bf53 PyEval_EvalFrameEx + 14337 21 org.python.python 0x0000000100e0ecd8 PyEval_EvalCodeEx + 1996 22 org.python.python 0x0000000100dacabf 0x100d84000 + 166591 23 org.python.python 0x0000000100d8bd32 PyObject_Call + 97 24 org.python.python 0x0000000100e0c5ec PyEval_EvalFrameEx + 16026 25 org.python.python 0x0000000100e0ecd8 PyEval_EvalCodeEx + 1996 26 org.python.python 0x0000000100e0ee6c 0x100d84000 + 568940 27 org.python.python 0x0000000100e0be0a PyEval_EvalFrameEx + 14008 28 org.python.python 0x0000000100e0ecd8 PyEval_EvalCodeEx + 1996 29 org.python.python 0x0000000100e0ed4d PyEval_EvalCode + 54 30 org.python.python 0x0000000100e2608f 0x100d84000 + 663695 31 org.python.python 0x0000000100e2614f PyRun_FileExFlags + 157 32 org.python.python 0x0000000100e272a2 PyRun_SimpleFileExFlags + 392 33 org.python.python 0x0000000100e372af Py_Main + 2715 34 org.python.python 0x0000000100d7de88 0x100d7d000 + 3720

Thread 1 Crashed: 0 libsystem_kernel.dylib 0x00007fff8e20dce2 __pthread_kill + 10 1 libsystem_c.dylib 0x00007fff8f7c87d2 pthread_kill + 95 2 libsystem_c.dylib 0x00007fff8f7b9a7a abort + 143 3 libc++abi.dylib 0x00007fff9058d7bc abort_message + 214 4 libc++abi.dylib 0x00007fff9058afdd default_terminate() + 42 5 libstdc++.6.dylib 0x00007fff8ec7687b std::terminate() + 21 6 libdolfin.1.3.dylib 0x0000000101d7b7cc _ZN6dolfin15OpenMpAssembler14assemble_cellsERNS_13GenericTensorERKNS_4FormERNS_3UFCEPKNS_12MeshFunctionImEEPSt6vectorIdSaIdEE.omp_fn.2 + 1452 7 libdolfin.1.3.dylib 0x0000000101ce1143 gomp_thread_start + 227 8 libsystem_c.dylib 0x00007fff8f7c68bf _pthread_start + 335 9 libsystem_c.dylib 0x00007fff8f7c9b75 thread_start + 13

Thread 2: 0 libsystem_c.dylib 0x00007fff8f7e5904 cpu_number + 0 1 libsystem_c.dylib 0x00007fff8f7e2c1e szone_malloc_should_clear + 107 2 libsystem_c.dylib 0x00007fff8f8183c8 malloc_zone_malloc + 77 3 libsystem_c.dylib 0x00007fff8f8191a4 malloc + 44 4 libsystem_c.dylib 0x00007fff8f8051fe vasprintf_l + 256 5 libc++abi.dylib 0x00007fff9058d7ac abort_message + 198 6 libc++abi.dylib 0x00007fff9058afdd default_terminate() + 42 7 libstdc++.6.dylib 0x00007fff8ec7687b std::terminate() + 21 8 libdolfin.1.3.dylib 0x0000000101d7b7cc _ZN6dolfin15OpenMpAssembler14assemble_cellsERNS_13GenericTensorERKNS_4FormERNS_3UFCEPKNS_12MeshFunctionImEEPSt6vectorIdSaIdEE.omp_fn.2 + 1452 9 libdolfin.1.3.dylib 0x0000000101ce1143 gomp_thread_start + 227 10 libsystem_c.dylib 0x00007fff8f7c68bf _pthread_start + 335 11 libsystem_c.dylib 0x00007fff8f7c9b75 thread_start + 13

Thread 1 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x0000000109b3c9d8 rdx: 0x0000000000000000 rdi: 0x0000000000001a03 rsi: 0x0000000000000006 rbp: 0x0000000109b3ca00 rsp: 0x0000000109b3c9d8 r8: 0x00007fff79473fb8 r9: 0x0000000000000004 r10: 0x00007fff8e20dd0a r11: 0xffffff80002dad60 r12: 0x000000010214e1e0 r13: 0x00007febfce000b0 r14: 0x0000000109b3d000 r15: 0x0000000109b3cb50 rip: 0x00007fff8e20dce2 rfl: 0x0000000000000246 cr2: 0x00007febfe000008 Logical CPU: 0

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0x7fff8dc85ff7 com.apple.LangAnalysis (1.7.0 - 1.7.0) <04C31EF0-912A-3004-A08F-CEC27030E0B2> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis 0x7fff8dcd4000 - 0x7fff8dcf1fff libxpc.dylib (77.19.0 - compatibility 1.0.0) <9F57891B-D7EF-3050-BEDD-21E7C6668248> /usr/lib/system/libxpc.dylib 0x7fff8dd31000 - 0x7fff8ddb4fef com.apple.Metadata (10.7.0 - 627.37) <B9BEB598-B6F2-3BFF-A8F3-C3C87CD076AB> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata 0x7fff8ddb5000 - 0x7fff8ddc8ff7 libCRFSuite.dylib (??? - ???) <034D4DAA-63F0-35E4-BCEF-338DD7A453DD> /usr/lib/libCRFSuite.dylib 0x7fff8ddc9000 - 0x7fff8e1f6fff libLAPACK.dylib (??? - ???) <4F2E1055-2207-340B-BB45-E4F16171EE0D> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib 0x7fff8e1f7000 - 0x7fff8e217fff libsystem_kernel.dylib (1699.32.7 - compatibility 1.0.0) <66C9F9BD-C7B3-30D4-B1A0-03C8A6392351> /usr/lib/system/libsystem_kernel.dylib 0x7fff8e218000 - 0x7fff8e6dffff FaceCoreLight (1.4.7 - compatibility 1.0.0) <BDD0E1DE-CF33-3AF8-B33B-4D1574CCC19D> /System/Library/PrivateFrameworks/FaceCoreLight.framework/Versions/A/FaceCoreLight 0x7fff8e889000 - 0x7fff8e90dff7 com.apple.ApplicationServices.ATS (317.12.0 - ???) <BE3C156D-8326-37AA-BC4E-D3C0D31BF976> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS 0x7fff8e9ed000 - 0x7fff8e9f2ff7 libsystem_network.dylib (??? - ???) <5DE7024E-1D2D-34A2-80F4-08326331A75B> /usr/lib/system/libsystem_network.dylib 0x7fff8ea70000 - 0x7fff8ea8ffff libresolv.9.dylib (46.1.0 - compatibility 1.0.0) <0635C52D-DD53-3721-A488-4C6E95607A74> /usr/lib/libresolv.9.dylib 0x7fff8ea90000 - 0x7fff8eb06fff com.apple.CoreSymbolication (2.2 - 73.2) <126415E3-3A35-315B-B4B7-507CDBED0D58> /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolication 0x7fff8eb07000 - 0x7fff8eb09fff libquarantine.dylib (36.7.0 - compatibility 1.0.0) <8D9832F9-E4A9-38C3-B880-E5210B2353C7> /usr/lib/system/libquarantine.dylib 0x7fff8eb0a000 - 0x7fff8eb3aff7 com.apple.DictionaryServices (1.2.1 - 158.3) <5E2EBBFD-D520-3379-A431-11DAA844B8D6> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices 0x7fff8eb3b000 - 0x7fff8eb48ff7 libbz2.1.0.dylib (1.0.5 - compatibility 1.0.0) <8EDE3492-D916-37B2-A066-3E0F054411FD> /usr/lib/libbz2.1.0.dylib 0x7fff8eb49000 - 0x7fff8eb49fff com.apple.Cocoa (6.6 - ???) <021D4214-9C23-3CD8-AFB2-F331697A4508> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa 0x7fff8ebbe000 - 0x7fff8ec00ff7 libcommonCrypto.dylib (55010.0.0 - compatibility 1.0.0) <A5B9778E-11C3-3F61-B740-1F2114E967FB> /usr/lib/system/libcommonCrypto.dylib 0x7fff8ec37000 - 0x7fff8ecaafff libstdc++.6.dylib (52.0.0 - compatibility 7.0.0) <6BDD43E4-A4B1-379E-9ED5-8C713653DFF2> /usr/lib/libstdc++.6.dylib 0x7fff8ecab000 - 0x7fff8ecaefff libRadiance.dylib (??? - ???) <CD89D70D-F177-3BAE-8A26-644EA7D5E28E> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib 0x7fff8ecaf000 - 0x7fff8ecaffff com.apple.Accelerate (1.7 - Accelerate 1.7) <82DDF6F5-FBC3-323D-B71D-CF7ABC5CF568> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate 0x7fff8ecb3000 - 0x7fff8ecbafff libGFXShared.dylib (??? - ???) <D3598924-B167-372E-8C9F-1BBF68852542> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff8ecca000 - 0x7fff8ecd9fff com.apple.opengl (1.8.1 - 1.8.1) <51B34133-CEE3-3FC6-82AC-ADF567AE673C> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff8ed20000 - 0x7fff8ed5afe7 com.apple.DebugSymbols (2.1 - 87) <ED2B177C-4146-3715-91DF-D99A8ED5449A> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols 0x7fff8ed5f000 - 0x7fff8ed64fff libcache.dylib (47.0.0 - compatibility 1.0.0) <B7757E2E-5A7D-362E-AB71-785FE79E1527> /usr/lib/system/libcache.dylib 0x7fff8ee74000 - 0x7fff8ee79fff libGIF.dylib (??? - ???) <58A4492D-AAE7-3B8F-8B06-62867471A3EE> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib 0x7fff8f53f000 - 0x7fff8f64bfff libcrypto.0.9.8.dylib (44.0.0 - compatibility 0.9.8) <3A8E1F89-5E26-3C8B-B538-81F5D61DBF8A> /usr/lib/libcrypto.0.9.8.dylib 0x7fff8f64c000 - 0x7fff8f759fff libJP2.dylib (??? - ???) <053950A7-6B92-320E-A6D7-808CE424F1AD> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib 0x7fff8f778000 - 0x7fff8f855fef libsystem_c.dylib (763.13.0 - compatibility 1.0.0) <41B43515-2806-3FBC-ACF1-A16F35B7E290> /usr/lib/system/libsystem_c.dylib 0x7fff8f887000 - 0x7fff8f98efe7 libsqlite3.dylib (9.6.0 - compatibility 9.0.0) <EE02BB01-64C9-304D-9719-A35F5CD6D04C> /usr/lib/libsqlite3.dylib 0x7fff8f98f000 - 0x7fff8f9fffff com.apple.datadetectorscore (3.0 - 179.4) <9C01D16F-75A9-3BDD-B91A-F0F32261A2E7> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore 0x7fff8fa00000 - 0x7fff8fb05fff libFontParser.dylib (??? - ???) <D2E56B6E-3182-3667-A78C-4172C435523A> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib 0x7fff8fb19000 - 0x7fff8fb1ffff libmacho.dylib (800.0.0 - compatibility 1.0.0) <D86F63EC-D2BD-32E0-8955-08B5EAFAD2CC> /usr/lib/system/libmacho.dylib 0x7fff8fdb6000 - 0x7fff8fdbfff7 libsystem_notify.dylib (80.1.0 - compatibility 1.0.0) <A4D651E3-D1C6-3934-AD49-7A104FD14596> /usr/lib/system/libsystem_notify.dylib 0x7fff8ff9f000 - 0x7fff8ff9ffff com.apple.CoreServices (53 - 53) <043C8026-8EDD-3241-B090-F589E24062EF> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices 0x7fff8ffa0000 - 0x7fff90584fff libBLAS.dylib (??? - ???) <C34F6D88-187F-33DC-8A68-C0C9D1FA36DF> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 0x7fff90585000 - 0x7fff90590ff7 libc++abi.dylib (14.0.0 - compatibility 1.0.0) <8FF3D766-D678-36F6-84AC-423C878E6D14> /usr/lib/libc++abi.dylib 0x7fff90591000 - 0x7fff908aafff com.apple.Foundation (6.7.2 - 833.25) <22AAC369-B63C-3C55-8AC6-C3ECBA44DA7B> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation 0x7fff908ab000 - 0x7fff9098fff7 com.apple.CoreServices.OSServices (478.49 - 478.49) <E5BF2069-ED1A-31F5-AFC2-4A530BD467AA> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices 0x7fff90cb3000 - 0x7fff90cb4fff liblangid.dylib (??? - ???) <CACBE3C3-2F7B-3EED-B50E-EDB73F473B77> /usr/lib/liblangid.dylib 0x7fff90cb5000 - 0x7fff90cccfff com.apple.MultitouchSupport.framework (231.4 - 231.4) <10A978D1-8781-33F0-BE45-60C9171F7278> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport 0x7fff90d64000 - 0x7fff90dc4fff libvDSP.dylib (325.4.0 - compatibility 1.0.0) <3A7521E6-5510-3FA7-AB65-79693A7A5839> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib 0x7fff90dc5000 - 0x7fff90dc6fff libunc.dylib (24.0.0 - compatibility 1.0.0) <C67B3B14-866C-314F-87FF-8025BEC2CAAC> /usr/lib/system/libunc.dylib 0x7fff90dc7000 - 0x7fff90dc7fff com.apple.ApplicationServices (41 - 41) <03F3FA8F-8D2A-3AB6-A8E3-40B001116339> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices 0x7fff91344000 - 0x7fff91348fff libdyld.dylib (195.5.0 - compatibility 1.0.0) <F1903B7A-D3FF-3390-909A-B24E09BAD1A5> /usr/lib/system/libdyld.dylib 0x7fff9148c000 - 0x7fff914eeff7 com.apple.Symbolication (1.3 - 91) <0945ACAF-AA0A-3D01-9960-72B51722EC1F> /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff914ef000 - 0x7fff914f5fff IOSurface (??? - ???) <77C6757B-D357-3E34-9424-48F962B5CC9C> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface 0x7fff9168f000 - 0x7fff916a5fff libGL.dylib (??? - ???) <A4876AE9-DDFE-3B9A-874E-09BC29D46C39> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff916a6000 - 0x7fff916e7fff com.apple.QD (3.40 - ???) <47674D2C-BE88-388E-B1B0-03F08BFFE5FD> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD 0x7fff916f0000 - 0x7fff916f1fff libDiagnosticMessagesClient.dylib (??? - ???) <3DCF577B-F126-302B-BCE2-4DB9A95B8598> /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff91a76000 - 0x7fff91a88ff7 libbsm.0.dylib (??? - ???) <349BB16F-75FA-363F-8D98-7A9C3FA90A0D> /usr/lib/libbsm.0.dylib 0x7fff91aeb000 - 0x7fff91b39fff libauto.dylib (??? - ???) <D8AC8458-DDD0-3939-8B96-B6CED81613EF> /usr/lib/libauto.dylib 0x7fff91b3a000 - 0x7fff91b44ff7 liblaunch.dylib (392.39.0 - compatibility 1.0.0) <8C235D13-2928-30E5-9E12-2CC3D6324AE2> /usr/lib/system/liblaunch.dylib 0x7fff91c8a000 - 0x7fff91c90ff7 libunwind.dylib (30.0.0 - compatibility 1.0.0) <1E9C6C8C-CBE8-3F4B-A5B5-E03E3AB53231> /usr/lib/system/libunwind.dylib 0x7fff92004000 - 0x7fff9202afff com.apple.framework.familycontrols (3.0 - 300) <6F0C58C0-22E7-3877-8CFA-1ED0CB3CE38B> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls 0x7fff9202b000 - 0x7fff92032fff libcopyfile.dylib (85.1.0 - compatibility 1.0.0) <172B1985-F24A-34E9-8D8B-A2403C9A0399> /usr/lib/system/libcopyfile.dylib 0x7fff92203000 - 0x7fff9251ffff com.apple.CoreServices.CarbonCore (960.25 - 960.25) <4FC1AB30-022C-3C67-AC46-FDCBFCB7EEDE> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore 0x7fff92520000 - 0x7fff925a5ff7 com.apple.Heimdal (2.2 - 2.0) <FF0BD9A4-6FB0-31E3-ABFB-563FBBEC45FC> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal 0x7fff925a6000 - 0x7fff9270dfff com.apple.CFNetwork (520.5.1 - 520.5.1) <08F70E26-5456-3BFB-8192-00D3CE40D3C9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork 0x7fff9270e000 - 0x7fff928e2ff7 com.apple.CoreFoundation (6.7.2 - 635.21) <62A3402E-A4E7-391F-AD20-1EF20236CE1B> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7fff928ef000 - 0x7fff9294aff7 com.apple.opencl (2.0.19 - 2.0.19) <B05BF605-73B8-328F-A228-6FA59E1FC73A> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff93fd8000 - 0x7fff940bce5f libobjc.A.dylib (228.0.0 - compatibility 1.0.0) <871E688B-CF57-3BC7-80D6-F6476DFF109B> /usr/lib/libobjc.A.dylib 0x7fff9412d000 - 0x7fff941a8ff7 com.apple.print.framework.PrintCore (7.1 - 366.3) <C5F39A82-0E77-3AD6-906A-20DD2EE8D374> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore 0x7fff94273000 - 0x7fff94274ff7 libsystem_sandbox.dylib (??? - ???) <2A09E4DA-F47C-35CB-B70C-E0492BA9F20E> /usr/lib/system/libsystem_sandbox.dylib 0x7fff94275000 - 0x7fff943d2fff com.apple.audio.toolbox.AudioToolbox (1.7.3 - 1.7.3) <5F1E4695-BC74-3ADD-8345-627BCD68201A> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox 0x7fff943d3000 - 0x7fff943f7fff com.apple.Kerberos (1.0 - 1) <1F826BCE-DA8F-381D-9C4C-A36AA0EA1CB9> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos 0x7fff943f8000 - 0x7fff94423ff7 libxslt.1.dylib (3.24.0 - compatibility 3.0.0) <E71220D3-8015-38EC-B97D-7FDB383C2BDC> /usr/lib/libxslt.1.dylib 0x7fff9442c000 - 0x7fff94437ff7 com.apple.speech.recognition.framework (4.0.21 - 4.0.21) <6540EAF2-E3BF-3D2E-B4C1-F106180D6F20> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition 0x7fff94438000 - 0x7fff944a0ff7 com.apple.coreui (1.2.2 - 165.11) <9316266A-39CA-3EC7-9C9E-726462CEFF4D> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI 0x7fff944a1000 - 0x7fff944a9fff libsystem_dnssd.dylib (??? - ???) <584B321E-5159-37CD-B2E7-82E069C70AFB> /usr/lib/system/libsystem_dnssd.dylib 0x7fff944aa000 - 0x7fff944b8fff com.apple.NetAuth (1.0 - 3.0) <F384FFFD-70F6-3B1C-A886-F5B446E456E7> /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth 0x7fff94767000 - 0x7fff94776ff7 libxar-nossl.dylib (??? - ???) <A6ABBFB9-E4ED-38AD-BBBB-F9958B9CEFB5> /usr/lib/libxar-nossl.dylib 0x7fff9479f000 - 0x7fff947bbff7 com.apple.GenerationalStorage (1.0 - 126.1) <509F52ED-E54B-3FEF-B3C2-759387B826E6> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage 0x7fff9536b000 - 0x7fff95379fff libdispatch.dylib (187.10.0 - compatibility 1.0.0) <8E03C652-922A-3399-93DE-9EA0CBFA0039> /usr/lib/system/libdispatch.dylib 0x7fff9537a000 - 0x7fff9537afff com.apple.Accelerate.vecLib (3.7 - vecLib 3.7) <C06A140F-6114-3B8B-B080-E509303145B8> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib 0x7fff95387000 - 0x7fff95428fff com.apple.LaunchServices (480.40 - 480.40) <C936A07F-0CF8-3F8E-BDB3-76AA7611B4CA> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices 0x7fff95429000 - 0x7fff9547dff7 com.apple.ScalableUserInterface (1.0 - 1) <1873D7BE-2272-31A1-8F85-F70C4D706B3B> /System/Library/Frameworks/QuartzCore.framework/Versions/A/Frameworks/ScalableUserInterface.framework/Versions/A/ScalableUserInterface 0x7fff954c1000 - 0x7fff954c8fff com.apple.NetFS (4.0 - 4.0) <B9F41443-679A-31AD-B0EB-36557DAF782B> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS 0x7fff954c9000 - 0x7fff95525ff7 com.apple.HIServices (1.21 - ???) <B012EE97-D1CD-3F4B-812D-9AC7E6852FE6> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices

External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 82606 thread_create: 1 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=255.3M resident=200.6M(79%) swapped_out_or_unallocated=54.7M(21%) Writable regions: Total=76.9M written=17.5M(23%) resident=31.3M(41%) swapped_out=0K(0%) unallocated=45.6M(59%)

REGION TYPE VIRTUAL =========== ======= MALLOC 60.0M MALLOC guard page 48K STACK GUARD 56.0M Stack 9232K VM_ALLOCATE 8K __CI_BITMAP 80K __DATA 22.1M __IMAGE 528K __LINKEDIT 80.1M __TEXT 175.2M __UNICODE 544K shared memory 12K =========== ======= TOTAL 403.6M

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[Jan Blechta]

What backend do you use? For me it also crashes with PETSc

*** Error:   Unable to successfully call PETSc function 'MatSetValues'.
*** Reason:  PETSc error code is: 63.
*** Where:   This error was encountered inside dolfin/la/PETScMatrix.cpp.

but not with uBLAS or Epetra.

[Mike Welland]

PETSc. Here is the error message that pops up in the terminal:

~~~~~~ [0]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message ------------------------------------ --------------------- Error Message ------------------------------------ [0]PETSC ERROR: [0]PETSC ERROR: Argument out of range! Argument out of range! [0]PETSC ERROR: [0]PETSC ERROR: New nonzero at (2,3412) caused a malloc! New nonzero at (2,1702) caused a malloc! [0]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------

---

[0]PETSC ERROR: [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [0]PETSC ERROR: [0]PETSC ERROR: See docs/changes/index.html for recent updates. See docs/changes/index.html for recent updates. [0]PETSC ERROR: [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: [0]PETSC ERROR: See docs/index.html for manual pages. See docs/index.html for manual pages. [0]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------

---

[0]PETSC ERROR: [0]PETSC ERROR: Unknown Name on a darwin11. named mac-6d-42701.msd.anl.gov by mwelland Mon Feb 17 08:17:15 2014 Unknown Name on a darwin11. named mac-6d-42701.msd.anl.gov by mwelland Mon Feb 17 08:17:15 2014 [0]PETSC ERROR: [0]PETSC ERROR: Libraries linked from /Users/johannr/fenics-1.3.0/local/lib Libraries linked from /Users/johannr/fenics-1.3.0/local/lib [0]PETSC ERROR: [0]PETSC ERROR: Configure run at Wed Jan 8 15:32:17 2014 Configure run at Wed Jan 8 15:32:17 2014 [0]PETSC ERROR: [0]PETSC ERROR: Configure options --prefix=/Users/johannr/fenics-1.3.0/local COPTFLAGS=-O2 --with-debugging=0 --with-clanguage=cxx --with-c-support=1 --with-blas-lapack-dir=/usr --with-umfpack=1 --with-umfpack-include=/Users/johannr/fenics-1.3.0/local/include/suitesparse --with-umfpack-lib="[/Users/johannr/fenics-1.3.0/local/lib/libumfpack.a,/Users/johannr/fenics-1.3.0/local/lib/libamd.a]" --with-spooles=1 --with-spooles-include=/Users/johannr/fenics-1.3.0/local/include --with-spooles-lib=/Users/johannr/fenics-1.3.0/local/lib/libspooles.a --with-ptscotch=1 --with-ptscotch-dir=/Users/johannr/fenics-1.3.0/local --with-ml=1 --with-ml-include=/Users/johannr/fenics-1.3.0/local/include/trilinos --with-ml-lib=/Users/johannr/fenics-1.3.0/local/lib/libml.dylib --with-hdf5=1 --with-hdf5-dir=/Users/johannr/fenics-1.3.0/local --with-x=0 -with-x11=0 --with-fortran=0 --with-shared-libraries=1 PETSC_DIR=/Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc PETSC_ARCH=darwin11.4.0-cxx-opt Configure options --prefix=/Users/johannr/fenics-1.3.0/local COPTFLAGS=-O2 --with-debugging=0 --with-clanguage=cxx --with-c-support=1 --with-blas-lapack-dir=/usr --with-umfpack=1 --with-umfpack-include=/Users/johannr/fenics-1.3.0/local/include/suitesparse --with-umfpack-lib="[/Users/johannr/fenics-1.3.0/local/lib/libumfpack.a,/Users/johannr/fenics-1.3.0/local/lib/libamd.a]" --with-spooles=1 --with-spooles-include=/Users/johannr/fenics-1.3.0/local/include --with-spooles-lib=/Users/johannr/fenics-1.3.0/local/lib/libspooles.a --with-ptscotch=1 --with-ptscotch-dir=/Users/johannr/fenics-1.3.0/local --with-ml=1 --with-ml-include=/Users/johannr/fenics-1.3.0/local/include/trilinos --with-ml-lib=/Users/johannr/fenics-1.3.0/local/lib/libml.dylib --with-hdf5=1 --with-hdf5-dir=/Users/johannr/fenics-1.3.0/local --with-x=0 -with-x11=0 --with-fortran=0 --with-shared-libraries=1 PETSC_DIR=/Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc PETSC_ARCH=darwin11.4.0-cxx-opt [0]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------

---

[0]PETSC ERROR: [0]PETSC ERROR: MatSetValues_SeqAIJ() line 346 in /Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc/src/mat/impls/aij/seq/aij.c MatSetValues_SeqAIJ() line 346 in /Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc/src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: [0]PETSC ERROR: MatSetValues() line 1025 in /Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc/src/mat/interface/matrix.c MatSetValues() line 1025 in /Users/johannr/fenics-1.3.0/fenics-superbuild/build-fenics/CMakeExternals/src/PETSc/src/mat/interface/matrix.c terminate called without an active exception[mac-6d-42701:01115] Process received signal [mac-6d-42701:01115] Signal: Abort trap: 6 (6) [mac-6d-42701:01115] Signal code: (0) terminate called without an active exceptionAbort trap: 6

[Jan Blechta]

This is the same error: argument out of range.

[Prof Garth Wells]

The problem here is that we make the PETSc matrix addition thread safe by colouring the mesh to avoid race conditions. With a global Lagrange multiplier, this cannot work.

A 'fix' would be to throw and error when using global dofs and Lagrange multipliers.

[Anders Logg (Chalmers)]

Removing milestone: 1.7 (automated comment)

[Prof Garth Wells]

Remove OpenMpAsssmbler. Fixes #246, #326 and #491.

→ <<cset e6d8ffbe80bc>>