Commits

Author Commit Message Labels Comments Date
ross...@gmail.com
toolfactory updates
ross...@gmail.com
july 5 update with TF. Something wierd about the heatmap to track down yet
ross...@gmail.com
added rglasso
Ross Lazarus
added cormap
guerler
Charts: Fix style
guerler
Charts: Update panel
guerler
Charts: Update boxplots and stacked bar
guerler
Charts: Add new selection panel, improve modularity, activate basic heat map
John Chilton
Bugfix: Yet another bug fix for workflow extraction with collection operations.
John Chilton
Bugfix: Small fix for running workflows with subcollection mapping steps.
greg
Enhance the galaxy API for the Tool Shed to retrieve the latest installable revision from the Tool Shed from an installed repository, specifying a name and owner. Enhance the ~/scripts/api/install_tool_shed_repositories.py script to allow the changeset_revision to be optional, and if not specified, the latest installable revision will be installed for the repository specified by the name and owner.
Nate Coraor
Add a config option for controlling the AMQP consumer timeout, catch socket.error and attempt to recover from it.
Daniel Blankenberg
Fix for setting metadata when uploading directly to a library.
John Chilton
Remove stray log statements in previous commit.
John Chilton
Bugfixes: More bug fixes for extracting collection-y workflows from a history.
Nate Coraor
Correctly handle the case where the AMQP SSL connection param parser gets params=None.
Dave B.
Fix missing imports, add self.app in a few more places.
John Chilton
Bugfix: Annotation, tags on collections update looking in old location.
greg
Fix for tool migration manager to use self.app instead of trans.app.
greg
Phase 2 of the tool dependency package installation framework rewrite: 1) rename the RecipeManager class to be the StepManager class and add a new TagManager class, both of which are contained in the recipe_manager.py module. 2) Add appropriate new classes for handling recipe tag sets to a new tag_handler.py module. Add a new InstallManager class with functions for installing tool dependencies. Eliminate the use of fabric_util.py and install_util.py.
Martin Cech
data libraries: first take on api for requesting roles(assigned and assignable) for permissions; do not use - needs to be tested on test
Martin Cech
extended ui-select module to support multiple inputs and on-demand ajax loading of paginated data
Daniel Blankenberg
Fix for when hours_between_check is defined in ini.
Daniel Blankenberg
Allow for an arbitrary number of tool_data_table_config_path files to be defined in ini file. Values are comma separated.
John Chilton
Bugfix for updating history dataset collection name.
John Chilton
Fix duplicated names in on_text when using multiple data inputs.
John Chilton
Fixes for DRMAA submission failures.
Branches
stable
John Chilton
Merged in natefoo/galaxy-central (pull request #392)
Nate Coraor
Allow specification of SSL client authentication parameters to the kombu
Daniel Blankenberg
Display line errors in data table registry display encountered when loading a location file.
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