Commits

Author Commit Message Labels Comments Date
Finn Bacall
Decided to post actual workflow across to avoid security issues#
Finn Bacall
Added ability to auth with myExperiment using a cookie. Improved some error messages
Finn Bacall
Changed method of getting current Galaxy instance URL
Finn Bacall
Moved link to myExperiment to under the regular import form
Finn Bacall
Added extra optional parameter to allow the source of a workflow to be declared on import
Finn Bacall
Change import_from_myexp feature to understand pure JSON, but have not tested and am not sure this is even used...
Finn Bacall
Changed export feature to export workflow in pure JSON format rather than a XML/JSON hybrid
Finn Bacall
Added link to myExperiment on the import_workflow page
Finn Bacall
Made myExperiment URL configurable
jeremy goecks
Support UnvalidatedValues when exporting histories.
Init Hello
Add admin tool to download and index a reference genome.
Greg Von Kuster
Fixes for handling errors when uploading a tarball to a tool shed repository that contains problematic contents. A bit of code cleanup is included as well.
Daniel Blankenberg
Fix for clearing implicitly converted dataset association when converted dataset is deleted.
Dannon Baker
Fix for history_contents API file display.
jeremy goecks
Merge
jeremy goecks
Fix display bugs associated with c5da9bd8bbfc. Pack script.
Nate Coraor
Fix "TypeError: array item must be char" on tool shed upload.
Daniel Blankenberg
Rewrite HbVar datasource tool.
Daniel Blankenberg
Update GenomeSpace exporter tool to use the newly introduced /personaldirectory as the root for auto-generated export paths.
Greg Von Kuster
Clarify host string value in community_wsgi.ini.
Greg Von Kuster
Enhance sample file handling for installed tool shed repositories to handle more than just .loc.sample files in the tool-data directory.
Daniel Blankenberg
Allow GenomeSpace importer tool to sniff filetype when GSMetadata object is not available.
Dannon Baker
Incorporation and slight update to pull request #43. The original contribution allowed access to file_path regardless of admin status and config setting.
Carlos Borroto
expose dataset full path through the API
Daniel Blankenberg
Update WormBase datasource tool to use WormBase 2.
Daniel Blankenberg
Fix typo in BAM slice tool.
Daniel Blankenberg
Add Slice BAM by regions tool.
Greg Von Kuster
Fix popup menu for viewing tool metadata in a tool shed repository to be compatible with new styles.
Greg Von Kuster
Eliminate the fabfile/method type from ToolRequirement.
Greg Von Kuster
Fix the instructions on the veiw request type page.
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