Source

galaxy-central /

Filename Size Date modified Message
client
config
contrib
cron
database
display_applications
doc
external_service_types
lib
locale
openid
scripts
static
templates
test
test-data
tool-data
tools
43 B
Create unit test directory with example test. Enable coverage report generation of unit tests (run_unit_tests.sh will automatically add --with-coverage to nosetests call if coverage is on the path, coverage report can than be generated with 'coverage html' and viewed at htmlcov/index.html). Update .hgignore to reflect these changes.
2.1 KB
Merge v15.03 to default
2.1 KB
Recommit .hgignore removed from git.
1.7 KB
Merge stable to default
2.1 KB
4.4 KB
Merge v15.03 to default
10.8 KB
Reindented license text to make it render better at bitbucket.
915 B
Rename universe_wsgi.ini -> galaxy.ini everywhere.
3.4 KB
scripts/common_startup.sh executes fetch_eggs.py correctly.
60 B
Allow command-line creation of initial database
2.6 KB
Update build platforms for dist-scrambling.
1.7 KB
Bump SQLAlchemy all the way to 0.9.8
146 B
Upgrade of splitting code to do splitting in the tasks versus in the Galaxy process
5.4 KB
Enable more verbose errors for install and test framework(?).
238 B
Change community to tool_shed in manage_db.sh notes.
63 B
File missed in the change set for the re-engineered InstallManager.
1.7 KB
Allow latest SQLAlchemy in requirements.txt
69 B
Restore a line deleted by mistake. Thanks John.
2.8 KB
Merge rolling_restart.sh in run.sh by adding --wait parameter.
160 B
Add a sequencer emulator webapp for demonstration purposes.
12 B
Open next-stable branch for 2014.10 release.
1.4 KB
typo
10.0 KB
Merge v15.03 to default
777 B
Rename tool_shed_wsgi.ini.sample to tool_shed_wsgi.ini, fix static and other errors I created when moving it to config/ in the first place.
63 B
Restore old set_metadata files to prevent failure of jobs running at
3.0 KB
Fixes to tool_list.py for legacy configurations and modified tool confs.
GALAXY
======
http://galaxyproject.org/

The latest information about Galaxy is always available via the Galaxy
website above.

HOW TO START
============
Galaxy requires Python 2.6 or 2.7. To check your python version, run:

% python -V
Python 2.7.3

Start Galaxy:

% sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be done
in the config/galaxy.ini file. Tools can be either installed from the Tool Shed
or added manually. For details please see the Galaxy wiki: 

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial


Not all dependencies are included for the tools provided in the sample
tool_conf.xml. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies