QCTOOL should not output sample information in BGEN v1.1 files

Issue #22 resolved
Gavin Band
repo owner created an issue

Currently if you do

qctool -g myfile.gen -s myfile.sample -og output.bgen -ofiletype bgen_v1.1

you get a 'BGEN v1.1' file but it contains a sample information block. This is against spec and breaks other tools including plink.

Comments (2)

  1. Log in to comment