qctool v2 cannot process .bgen file created with -excl-variants

Issue #43 new
Scott Ritchie
created an issue

After creating a .bgen file using -excl-variants to filter out several duplicates, subsequent calls to qctool using -excl-variants to apply another filter crash with the following error:

Processing SNPs : (183/?,7.8s,23.5/s)qctool2: ../genfile/include/genfile/zlib.hpp:70: void genfile::zlib_uncompress(const genfile::byte_t, const genfile::byte_t, std::vector<T, std::allocator<_CharT> >*) [with T = unsigned char]: Assertion `result == 0' failed.

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