Build failed: -> task failed (err #1): {task: cxx PloidyConvertingSNPDataSource.cpp -> PloidyConvertingSNPDataSource_1.o}

Issue #45 resolved
Former user created an issue

Hi, I tried to build from both default and beta sources but got the same error. I am using g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)

Build failed:  -> task failed (err #1):     {task: cxx PloidyConvertingSNPDataSource.cpp -> PloidyConvertingSNPDataSource_1.o}

The output is attached. I dont know whats the issue. Please help.

Comments (9)

  1. Mian Asbat Ahmad

    Hi Gavin, thanks for reply and sorry for posting it again. But I have a bit different situation. Last time i got error on [190/742] I removed throw from line 60 in genfile/include/genfile/vcf/Types.hpp Now I am getting the following errors in step [215/742]

    {task: cxx VariantDataReader.cpp -> VariantDataReader_1.o} -> task failed (err #1): 
    
    {task: cxx PloidyConvertingSNPDataSource.cpp -> 
    
    PloidyConvertingSNPDataSource_1.o} -> task failed (err #1): {task: cxx Types.cpp -> Types_1.o} -> task failed (err #1): {task: cxx CallReader.cpp -> CallReader_1.o} -> task failed (err #1): {task: cxx get_set_eigen.cpp -> get_set_eigen_1.o} -> task 
    
    failed (err #1): {task: cxx test_snp_data_source_chain.cpp -> test_snp_data_source_chain_2.o} -> task failed (err #1): {task: cxx VCFFormatSNPDataSource.cpp -> VCFFormatSNPDataSource_1.o} -> task failed (err #1): {task: cxx test_vcf_call_reader.cpp -> test_vcf_call_reader_2.o} -> task 
    
    failed (err #1): {task: cxx test_vcf_types.cpp -> test_vcf_types_2.o} -> task failed (err #1): {task: cxx test_snp_data_source_rack.cpp -> test_snp_data_source_rack_2.o} -> task failed (err #1): {task: cxx test_strand_aligning_snp_data_source.cpp -> test_strand_aligning_snp_data_source_2.o} -> task failed (err #1): {task: cxx test_vcf_format_source.cpp -> test_vcf_format_source_2.o}
    
  2. Mian Asbat Ahmad

    I have the following four tools missing when I configure but I think you mentioned HERE that as long as it configure successfully it should be fine.

    Checking for library cblas : no 
    
    Checking for library blas : no 
    
    Checking for library openblas : no
    
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