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  3. kma

Issues

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Issues (1–25 of 76)

Title T P Status Votes Assignee Created Updated Actions
#73: differences in number of reads between *frag.gz and frag_raw.gz files
bug trivial resolved
#12: Wish: Output reference position in matrix file
enhancement minor open
#76: Non-square matrix of Szymkiewicz-Simpson dissimilarity with KMA
bug major new
#75: Problems indexing Silva Database
task major new
#74: Why there have repeat seqid and 0 in template column of frag_raw file？
bug major resolved
#69: Error batch-file-temp - Segmentation fault (core dumped)
bug major resolved
#71: nt.length.b Error: 2 (No such file or directory)
bug major resolved
#72: Appropriate parameters for target enrichment antimicrobial resistance(AMR) Metagenomics
enhancement major new
#70: Faster way to index a database ?
enhancement trivial new
#68: optimal use with MAGs/other bacterial genomes?
enhancement major new
#67: Error in sam output
bug major resolved
#59: output all reads in sam file
bug major resolved
#66: Error in sam output
bug major resolved
#65: Filtering Results
task minor new
#63: ReadCount vs ReadCountAln
task minor new
#64: -tsv option does not produce proper tsv output
bug minor resolved
#45: kma ended abruptly saying killed: 9.
bug major resolved
#46: Using CCMetagen with custom database
bug trivial resolved
#50: Sam output file confusion
task major resolved
#54: Feature request: Write @PG flag in SAM output
enhancement minor resolved
#48: Report all mappings
bug major resolved
#58: Disk space consumption
bug major resolved
#62: i using version 1.4.0
bug major resolved
#61: smallcase and caps in consensus fsa output?
enhancement minor closed
#60: Please use annotated git tags for releases
enhancement major resolved
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