KMA incorrectly returns error code 22

[Jakob Nissen]

Dear Philip

When updating my pipeline, I decided to change the workflow a little bit. However, I now get an exit code of 22 when running KMA. This crashes my Snakemake workflow. But everything appears to work fine - all files are generated, and there is no suspicious output message.

My command is of the form `kma -ipe fw.fq rv.fq -o aln/kma1 -t_db aln/cat`. I see the same behaviour when running the command manually, outside Snakemake. I’m using KMA 1.3.8 from BioConda.

Let me know if you need help reproducing it on your side.

[ptlcc]

Dear Jakob

I can’t reproduce it here, can you send a minimal example where it goes wrong.

Best,
Philip

[Jakob Nissen]

I’ve sent you an e-mail (on your old dtu food mail) with a link to a reproducible example. Let me know if it didn’t reach you.

[ptlcc]

Hi Jakob

I got it, it should be fixed in v1.3.10.

Best,
Philip