input/sampleX.fq.gz benchmark data file :: please provide

[Eric Deveaud]

Hello after having installed kma on our cluster I wanted to run some functional tests.

after reading the benchMarkCMDs.txt I ran the first command with success but I wasn’t abble to locate the input/sampleX.fq.gz file

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can you provide it or let me know where it can be grabbed.

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regards

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Eric

[ptlcc]

If you were able to run the cmd:

chop_DB -i ResFinder.fasta -o output/

Then there should be some test files in the directory “output/“

A test cmd could be:

kma -i output/chopDB1.fastq.gz -o output/chopDB1 -t_db ResFinder -and -1t1

Given that you were able to run:

kma_index -i ResFinder.fasta -o ResFinder

[Eric Deveaud]

thanks will do that

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Eric