Segfault during local assembly

[Jakob Nissen]

KMA consistently segfaults when run.

KMA version: KMA-1.2.24

OS version: MacOS Catalina 10.15.4

Command:

../kma/kma -ipe ../VOF/200501_M03704_0228_000000000-CPYBD/V000034484* -o kmaout -t_db swine_kma_db -t 8

Log:

# Running KMA.
#
# Total time used for DB loading: 0.02 s.
#
# Finding k-mer ankers
# Reading inputfile:    ../VOF/200501_M03704_0228_000000000-CPYBD/V000034484_S4_L001_R1_001.fastq.gz ../VOF/200501_M03704_0228_000000000-CPYBD/V000034484_S4_L001_R2_001.fastq.gz
# Phred scale:  33
#
# Query converted
#
# Query ankered
#
# KMA mapping done
#
# Sort, output and select KMA alignments.
# Total time for sorting and outputting KMA alignment   1.14 s.
#
# Doing local assemblies of found templates, and output results
zsh: segmentation fault  ../kma/kma -ipe ../VOF/200501_M03704_0228_000000000-CPYBD/V000034484* -o   

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[ptlcc]

Dear Jakob

‌

Do you have a way of sharing the database and sequences that create this error.

‌

Best,

Philip

[Jakob Nissen]

Unfortunately the dataset I used is protected. I will try to create a minimal example dataset / readset and send it to you along with the exact commands and installation instructions I followed.

[Jakob Nissen]

Closing this issue as you have solved it in release 1.2.26. Thanks for the swift reply!