1. Genomic Epidemiology Avatar Genomic Epidemiology
  2. CGE
  3. ResFinder

Issues

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Issues (1–25 of 117)

Title T P Status Votes Assignee Created Updated Actions
#124: KeyError: 'ampC-promoter'
bug major resolved
#123: Resfinder's call to get latest commit ID creates problems for pipelines with multiple users
bug major resolved
#122: Remaining typos: lenght -> length
bug minor wontfix
#110: No Klebsiella panel found in Pointfinder db?
bug major resolved
#109: No output found after running ResFinder
bug major resolved
#105: ValueError: SHA could not be resolved, git returned: b''
bug major resolved
#101: line 9 error
bug minor resolved
#97: kma: Permission denied
bug major closed
#60: Warning: gene is missing from Notes file. Please inform curator
enhancement trivial resolved
#96: permissom error ?
bug major resolved
#85: MISMATCHES in Mycobacterium tuberculosis
enhancement minor closed
#114: 'var_aa' error
bug major resolved
#120: Typo in JSON output format field "ref_seq_lenght".
bug minor resolved
#119: Git tag 4.1.11 missing
bug major resolved
#106: Nanopore support
bug major resolved
#111: Is there information indicating if the hit is "+" or "-" strand in ResFinder_Hit_in_genome_seq.fsa?
enhancement minor resolved
#104: Can pointfinder results contain the location of the mutation in the assembly?
enhancement major new
#107: Extra characters/columns in pheno_table results?
bug major resolved
#108: Install "ps" in dockerfile
enhancement major resolved
#95: resfinder error
bug major duplicate
#61: results
task major resolved
#98: unknown_mut flag does not work properly
bug minor resolved
#103: PointFinder loses seq_variations and phenotypes when contig name contains a ':'
bug major resolved
#102: AttributeError: 'PhenoDB' object has no attribute 'mut_type_is_defined'
bug major resolved
#99: Unable to analyse this particular genome using official Docker container
bug major resolved
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