Extra characters/columns in pheno_table results?

Hi there,

I see references to extra characters/columns in my pheno_table.txt results. See line 3 (streptomycin), line 4 (amikacin), and line 7 (kanamycin) below. It seems like there's an extra "3" placed before the Genetic Background column and I don't know what it corresponds to.

Image:

Code run:

python3 -m resfinder -o amr/resfinder -s "Other" -l 0.8 -t 0.9 -d -db_res /home/src/resfinder/resfinder_db/ -db_disinf /home/src/resfinder/disinfinder_db/ --acquired -ifq inputs/sample1_1.fq.gz inputs/sample1_2.fq.gz

Text showing error (see the "3" in streptomycin, amikacin, kanamycin rows)

Antimicrobial Class WGS-predicted phenotype Match Genetic background

gentamicin aminoglycoside Resistant 1 aph(2'')-Ib (aph(2'')-Ib_AF207840)
tobramycin aminoglycoside Resistant 1 aph(2'')-Ib (aph(2'')-Ib_AF207840), aac(6')-Im (aac(6')-Im_AF337947)
streptomycin aminoglycoside Resistant 2 3 ant(6)-Ia (ant(6)-Ia_KF864551), ant(6)-Ia (ant(6)-Ia_AF330699)
amikacin aminoglycoside Resistant 1 3 aph(2'')-Ib (aph(2'')-Ib_AF207840), aac(6')-Im (aac(6')-Im_AF337947), aph(3')-III (aph(3')-III_M26832)
isepamicin aminoglycoside Resistant 3 aph(3')-III (aph(3')-III_M26832)
dibekacin aminoglycoside No resistance 0
kanamycin aminoglycoside Resistant 1 3 aph(2'')-Ib (aph(2'')-Ib_AF207840), aac(6')-Im (aac(6')-Im_AF337947), aph(3')-III (aph(3')-III_M26832)

If it's not a bug, can you give me some parameters as to why/when this happens? And also what it means? It's breaking my downstream code which expects 5 columns for this output.

Thanks!

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