Install "ps" in dockerfile

[Matt Parker]

Hello,

We’d like to run resfinder as part of a nextflow workflow using your docker image but unfortunately the image doesn’t include ps and so nextflow does not like it (Nextflow uses ps to monitor processes inside the container)

The addition of procps to the apt-get fixes the issue.

RUN apt-get update -qq; \
    apt-get install --no-install-recommends -y -qq git \
    build-essential \
    wget \
    ncbi-blast+ \
    libz-dev \
    procps \
    ; \

It would be great if you could incorporate this change!

Thanks

Matt

[RolfKaas]

Hi Matt,

Of course. I will make sure this is added in the next image we release. I expect it to be released some time next week.

Best regards,

Rolf Sommer Kaas

[RolfKaas]

We have included the suggested enhancement in ResFinder version 4.3.1, it has also been pushed to docker hub.

Thanks for the suggestion!

Best regards, Rolf Sommer Kaas