Is there information indicating if the hit is "+" or "-" strand in ResFinder_Hit_in_genome_seq.fsa?

[Kaixin Hu]

Hi,

Is there information indicating if the hit is "+" or "-" strand? 

And are sequences in ResFinder_Hit_in_genome_seq.fsa the original query sequences or corrected if "-" strand ?

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Thanks!

[Edison Alain von Matt]

Dear Kaixin Hu,

thank you for your message.

Unfortunately, we not provide any information if the hit is on the “+” or “-” strand.

Furthermore, when the minus (reversed) strand of the query sequence is similar to the blast/kma database template sequence, the alignment is reported in ResFinder_Hit_in_genome_seq.fsa with the query sequence in reversed coordinates.

Please let me know if you have additional questions.

Best regards

Eddy

[Kaixin Hu]

Thank you very much!