- edited description
Is there information indicating if the hit is "+" or "-" strand in ResFinder_Hit_in_genome_seq.fsa?
Issue #111
resolved
Hi,
Is there information indicating if the hit is "+" or "-" strand?
And are sequences in ResFinder_Hit_in_genome_seq.fsa the original query sequences or corrected if "-" strand ?
Thanks!
Comments (3)
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reporter -
Dear Kaixin Hu,
thank you for your message.
Unfortunately, we not provide any information if the hit is on the “+” or “-” strand.
Furthermore, when the minus (reversed) strand of the query sequence is similar to the blast/kma database template sequence, the alignment is reported in ResFinder_Hit_in_genome_seq.fsa with the query sequence in reversed coordinates.
Please let me know if you have additional questions.
Best regards
Eddy
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reporter - changed status to resolved
Thank you very much!
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