Hello, When I try to run the test in the tutorial "python3 ./ResFinder/resfinder/run_resfinder.py -o path/to/outdir -k .ResFinder/kma/kma_index -s "Escherichia coli" -l 0.6 -t 0.8 --acquired --point -ifq ./ResFinder/resfinder/tests/data/test_isolate_01_*", there's this error: Error: KMA did not run as expected. KMA finished with the following response:

Invalid option: -e

Printing help message:

kma_index creates the databases needed to run KMA, from a list of fasta files given.

Options are: Desc: Default:

-i Input/query file name (STDIN: "--") None

-o Output file Input/template file

-batch Batch input file

-deCon File with contamination (STDIN: "--") None/False

-batchD Batch decon file

-t_db Add to existing DB None/False

-k Kmersize 16

-k_t Kmersize for template identification 16

-k_i Kmersize for indexing 16

-ML Minimum length of templates kmersize (16)

-CS Start Chain size 1 M

-ME Mega DB False

-NI Do not dump *.index.b False

-Sparse Make Sparse DB ('-' for no prefix) None/False

-ht Homology template 1.0

-hq Homology query 1.0

-and Both homolgy thresholds

has to be reached or

-nbp No bias print False

-v Version

-h Shows this help message

kma issue