- changed status to resolved
DisinfFinder fails to start with nanopore reads
Issue #89
resolved
Probably a minor setting somewhere:
$ resfinder --disinfectant --nanopore --inputfastq data/nano.fq.gz --db_path_disinf databases/disinfinder --db_path_res databases/resfinder -o foo
Traceback (most recent call last):
File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/opt/conda/lib/python3.9/site-packages/resfinder/__main__.py", line 5, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.9/site-packages/resfinder/run_resfinder.py", line 339, in main
kma_run = disinf_finder.kma(
TypeError: kma() missing 1 required positional argument: 'databases'
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Fix issue
#89→ <<cset a1705128ef08>>