Commits

Author Commit Message Labels Comments Date
boliu
merge with galaxy-globus-cvrg
boliu
modify FastQC
boliu
modify picard_wrapper.py
boliu
reorder the tools in tool_conf.xml
boliu
modify datatypes_conf.xml
boliu
add RNA-Seq tools (CummeRbund,Miso) and NCBO tools
boliu
modify tool_data_table_conf.xml
boliu
change to consistent with CloudMan Galaxy (attach EBS volumes)
boliu
Add Picard and GATK tools
boliu
add Picard and GATK tools
boliu
modify configuration files
boliu
update to latest Galaxy (Mar 9 version)
Greg Von Kuster
Fix for populating the tool panel and generating the integrated_tool_panel.xml file.
Dannon Baker
Workflows: Multiple run workflows now copy input datasets to newly created histories when used.
Greg Von Kuster
Fix for generating ToolSectionLabels in the integrated_tool_panel.xml file.
jeremy goecks
Editable text support: (a) use jQuery function style and (b) add support for tipsy. Trackster: add help/tipsy text when setting line track/histogram max/min. Pack scripts.
Daniel Blankenberg
Fix for Error 349 (net::ERR_RESPONSE_HEADERS_MULTIPLE_CONTENT_DISPOSITION) when downloading exported histories.
Daniel Blankenberg
Fix for Error 349 (net::ERR_RESPONSE_HEADERS_MULTIPLE_CONTENT_DISPOSITION) on downloads from a library.
Daniel Blankenberg
Fix for 'Error 349 (net::ERR_RESPONSE_HEADERS_MULTIPLE_CONTENT_DISPOSITION): Multiple Content-Disposition headers received.' error occuring when downloading certain datasets using Chrome browser.
Greg Von Kuster
Introduce a new integrated_tool_panle.xml file which is initially created by parsing all tool panel config files (e.g., tool_conf.xml, shed_tool_conf.xml, migrated_tools.xml, etc). After the file is created, the order of the items displayed in the tool panel is defined by integrated_tool_panel.xml. Galaxy admins can easily edit the file to change the order of items in the tool panel. After it is generated, all tool panel config files (e.g., tool_conf.xml, shed_tool_conf.xml, migrated_tools.xml, etc) will be used to load tools, workflows, etc, while integrated tool_panel.xml will define where they are displayed.
jeremy goecks
Trackster: manually track view redraw requests so that only one redraw is done.
Dannon Baker
Run workflow: Update and clarify label selector.
jeremy goecks
Trackster: dynamic filtering of read tracks.
Dannon Baker
Workflow Running - Properly select only Input Dataset steps for multi-input configuration.
Daniel Blankenberg
In library uploads, allow inheriting the existing datasets metadata when replacing. Allow setting library metadata when adding datasets from a history.
Dannon Baker
Add config option (sanitize_all_html, still enabled by default) to control strict dataset html output sanitization.
Greg Von Kuster
Keep empty sections in the tool panel when deactivating / uninstalling a repository with tools.
jeremy goecks
Merge
jeremy goecks
Fix custom-build UI bugs.
Greg Von Kuster
Fixes for deactivating / uninstalling a repository containing tools.
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