Commits

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Author Commit Message Labels Comments Date
Mike Steder
Committing changes (minus picard tools) from the bionimbus machine.
Branches
bionimbus
steder
Removing script changes as we've updated the PATH
steder
Checking in these changes to the paths and interpreters used for the 2 Blastp commands.
steder
Added debugging prints to the condor runner.
steder
Merged in condor job runner
steder
Stupid mistake, these files xml files are needed.
steder
Condor runner appears to work: need to test with globus transfer commands.
Mike Steder
Actually added the condor job runner to source control.
Mike Steder
In progress: adding condor job runner.
Mike Steder
Removing unused xml config files.
steder
Fixed yet another path bug.
steder
Galaxy now writes any symbolic links to // and creates any path segments specified
steder
Added per user directories on top of the scratch output dir.
steder
Tweaks on the cluster to actually get transfers working.
Mike Steder
Merged in Bryce's condor changes.
Mike Steder
Added configuration variables to specify paths to user keys and user/site certs.
Bryce Allen
add condor blastp tool
Mike Steder
Merged in changes and fixed a bug in the path used in the 'to globus' case.
steder
Added scratch directory for getting datasets out to a globus online readable directory.
Mike Steder
Modified the transfers to use your username as your go username and to find your keys and certs in your home directory.
steder
Adding a little more debugging info.
Mike Steder
Added globus_endpoint option to the to the sample config.
Mike Steder
Merging in import change.
Mike Steder
Added the 3 globus transfer tools to the sample tool conf and updated the description / help for those tools.
Mike Steder
Got tools to move data to and from on go. Credentials are still being specified manually.
steder
fixed error that required paster serve to be called with --reload
Mike Steder
Hacked the upload tool to use username instead of e-mail address to determine a users ftp directory.
Mike Steder
Added auto-reload options for paster serve and customized the galaxy app to watch the tool config and tools directory for changes.
Mike Steder
Taking a break to switch gears to add globus credentials to a user.
Mike Steder
Removed breakpoint.
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