Commits

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Author Commit Message Labels Comments Date
John Chilton
Specify meme requirement for fimo tool.
Branches
meme_requirement_on_fimo
Dannon Baker
Slight cleanup of the previous workflow share removal commit.
Dannon Baker
Merge.
Dannon Baker
Workflows: Add the ability to remove workflows that have been shared with you.
clements
Changed the default new user mailing list from galaxy-user to galaxy-announce, which is a much lower volume. Also added text to link to wiki page with all mailing lists.
Nate Coraor
DRMAA runner no longer needs to clean up its stdout/stderr since they live in the working directory which is cleaned up by the job wrapper.
Daniel Blankenberg
Minor cleanup for FreeBayes tool.
Daniel Blankenberg
FreeBayes: make trace and failed alleles outputs optional.
Dannon Baker
History export - now works for a guest user.
Dannon Baker
History Size wasn't filtering out 'purged' datasets in the summary size, should now reflect accurate total on disk.
jeremy goecks
Update version support information in Cuff* wrappers.
jeremy goecks
Add num_threads parameter to cuffmerge wrapper script.
jeremy goecks
Add num-threads param to cuffdiff.
jeremy goecks
Add cuffmerge tool wrapper and functional test.
jeremy goecks
To be compatible with distributed object store, use create() when adding data subsets for Trackster.
jeremy goecks
Change default sort for Pages list to update time.
jeremy goecks
Add overwrite param when setting metadata in Trackster data subsets.
jeremy goecks
Fix bug: when setting chromInfo, do not assume a fasta file exists.
Dannon Baker
Refactor to condense workflow display methods.
Dannon Baker
Workflows:
Daniel Blankenberg
Add a new complete FreeBayes tool configuration.
Dannon Baker
Workflow Running: Add a more useful error message when input keys don't map upon executing a workflow instead of tossing to Server Error. This happens in situations where outputs are conditionally filtered (See SICER's significant_islands_summary_output_file) yet still used in the workflows.
jeremy goecks
Pack scripts.
jeremy goecks
Trackster: inline editing of LineTrack min and max values.
Nate Coraor
Fix for dataset cleanup scripts and object store.
jeremy goecks
Trackster: more object-specific equality operators.
jeremy goecks
Trackster: use object-specific (in)equality operators.
jeremy goecks
Trackster: add histogram max to FeatureTrack preferences and make histogram max inline editable. Pack scripts as well.
Greg Von Kuster
Replace None with an empty string when creating tool panel Elements for installed repository tools.
Guru Ananda
added cacao genome to manual builds
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