Commits

Daniel Blankenberg  committed 843fdc5

Updates for GenomeSpace file browser importer.

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  • Parent commits 52ce5e6

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Files changed (3)

File tool_conf.xml.sample

     <tool file="data_source/epigraph_import.xml" />
     <tool file="data_source/epigraph_import_test.xml" />
     <tool file="data_source/hbvar.xml" />
-    <tool file="data_source/genomespace_file_browser_dev.xml" />
+    <tool file="data_source/genomespace_file_browser_prod.xml" />
+    <!-- <tool file="data_source/genomespace_file_browser_test.xml" />
+    <tool file="data_source/genomespace_file_browser_dev.xml" /> -->
     <tool file="validation/fix_errors.xml" />
   </section>
   <section name="Send Data" id="send">

File tools/data_source/genomespace_file_browser_prod.xml

+<?xml version="1.0"?>
+<tool name="GenomeSpace import" id="genomespace_file_browser_prod" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1">
+    <description>from file browser</description>
+    <command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "prod"</command>
+    <inputs action="https://dm.genomespace.org/datamanager/defaultdirectory" check_values="False" method="post"> 
+        <display>go to GenomeSpace Data Manager </display>
+        <param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&amp;runtool_btn=Execute" />
+        <param name="appName" type="hidden" value="Galaxy" />
+    </inputs>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="auto" />
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>

File tools/data_source/genomespace_file_browser_test.xml

+<?xml version="1.0"?>
+<tool name="GenomeSpace import" id="genomespace_file_browser_test" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1">
+    <description>from file browser (test)</description>
+    <command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "test"</command>
+    <inputs action="https://dmtest.genomespace.org:8444/datamanager/defaultdirectory" check_values="False" method="post"> 
+        <display>go to GenomeSpace Data Manager </display>
+        <param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&amp;runtool_btn=Execute" />
+        <param name="appName" type="hidden" value="Galaxy" />
+    </inputs>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="auto" />
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>