Commits

Author Commit Message Labels Comments Date
Hanfei Sun
Modify some string in Mako templetes for complete i18n support.
Greg Von Kuster
Re-engineer the datatypes registry so that it is initialized once when the Galaxy server is started, but data types can continue to be loaded throughout the Galaxy server's session (hopefully this doesn't break anything).
jeremy goecks
Trackster: refactor action icon creation and initialization.
Greg Von Kuster
More fixes for Galaxy <-> tool shed communication.
Greg Von Kuster
Fixes for Galaxy / tool shed communication.
Daniel Blankenberg
Have fimo.xml use fields.path approach instead of directly filtering on data table.
Daniel Blankenberg
Have rgPicardGCBiasMetrics.xml use fields.path approach instead of directly filtering on data table.
Greg Von Kuster
Enhance User preferences within a Galaxy tool shed to enable users to elect to receive email when content is first uploaded to a new repository. Also add a new grid interface to enable users to easily manage registering with any tool shed respositories to receive email when changes are made to the selected repositories.
Daniel Blankenberg
Updates for GenomeSpace file browser importer.
Daniel Blankenberg
Update help for some SAMTools.
Daniel Blankenberg
Remove no longer supported ROD datatypes from GATK tools (version 1.3).
Daniel Blankenberg
Add SAMTools mpileup.
Daniel Blankenberg
Remove --rodToIntervalTrackName from GATK tools; not present in version 1.3.
Greg Von Kuster
Fix for generating metadata on the repository tip.
Greg Von Kuster
Subtle but critical fixes in resetting all metadata for tool shed repositories ( and some code clean up ).
Daniel Blankenberg
Update modified generic GATK 1.3 arguments.
Daniel Blankenberg
Add picard_FastqToSam.xml and picard_SamToFastq.xml to tool_conf.xml.main.
jeremy goecks
Fix Tile variable name so that it connotes what it actually stores.
jeremy goecks
Fix GFFDataProvider bugs introduced in 9b7d5c1c0be6.
Greg Von Kuster
Add the ability to reset all metadata (for every change set) in a tool shed repository (currently restricted to an admin), and add a fix for checking security when making changes to tool shed repository information on the Manage repsoitory page.
Richard Burhans
Bug fixes for the ctd tool
jeremy goecks
Update Cuffdiff test data to be compatible with v1.1.0
jeremy goecks
Update Cuffcompare test data to be compatible with v1.1.0
jeremy goecks
Update test data for cufflinks v1.1.0
Nate Coraor
Merged updates-for-tophat-1.3.1+ branch closing.
Nate Coraor
Closed branch updates-for-tophat-1.3.1+
Branches
updates-for-tophat-1.3.1+
Greg Von Kuster
Add disk_usage methods to tool shed's User model object - fixes server error when viewing User Preferences.
jeremy goecks
Do not use route memory when creating URLs to metadata files.
Daniel Blankenberg
Update GenomeSpace import from file browser tool to use new versioned API.
jeremy goecks
Trackster performance improvements: (a) build tile messages only once during tile creation and (b) move tiles rather than show/hide tiles when scrolling.
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