1. Hanfei Sun
  2. HQseq

Overview

Introduction

HQseq is a High flexible pipeline for Quality control of ChIPseq data.

Changes

  1. main executable: hqseq
  2. fastqc executable: dc_fastqc
  3. foldchange qc executable: dc_foldchange_qc
  4. peak read plot executable: dc_peak_read_plot
  5. ChIP-seq pipeline: dc_pipe
  6. merge all tex codes into one file: lib/tex_summary.py
  7. add a data folder: lib/data
  8. add a setup script
  9. delete the contamination script