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Hanfei Sun committed 3293d4b

Change the output-dir of summary_cufflinks

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Files changed (1)

 #! /usr/bin/env python
-# Time-stamp: <2011-11-13 21:38:41 sunhf>
+# Time-stamp: <2011-11-17 15:28:00 sunhf>
 """Rnaseq pipeline main script
 
 Copyright (c) 2011 Hanfei Sun <hfsun.tju@gmail.com>
         
         for a_tag in conf['datalist']:
             self.data_path[a_tag] = self.tag2exp(a_tag)
-        self.outputdir = self.find_path(conf['output.outputdir'], "Summary_cufflinks","Correlation")            
+        self.outputdir = self.find_path(conf['output.outputdir'], "Summary")            
         self.get_dir(self.outputdir)
 
         cmd_pairs=space_join(*[an_exp+" "+a_tag for a_tag,an_exp in self.data_path.items()])
         List_append(self.cmd_list,
                     space_join("Rscript","Rlib/summary.r",
                                cmd_pairs,
-                               self.outputdir+"/"+"summary"))
+                               self.outputdir+"/"+"rpkm_correlation"))
             
 class Summary_Fastqc(ModuleBase):
     def __init__(self,conf,source="Fastqc"):