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Hanfei Sun committed 8b04598

Change the num for evenness print

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Files changed (2)

evenness_qclib.py

 
         summary.OnARead(aligned, chr, strand, pos, sequence, qty)
 
-        if (line_cnt % 10000 == 0):
+        if (line_cnt % 100000 == 0):
             print "%d lines have been scanned" % (line_cnt)
 
 
 # and 'hg19' for human. For more information, see the 'static library'
 # region below.
 
-VERSION = hg19
+VERSION = mm9
 
 [Data]
 # Define a variable with a fastq path, which is used in [comparison]
 # section below
 
-Data1 = for_test/micro.fastq
-Data2 = for_test/micro2.fastq
+RNAi = /mnt/Storage/home/liuj/Han_histone/prdm14/prdm14_RNAi.fastq
+control = /mnt/Storage/home/liuj/Han_histone/prdm14/prdm14_control.fastq
+
 
 [comparison]
 # Create a comparison for more analysis, such as differential genes
 # "Sample1vsSample2 = sample1:sample2,sample2.rep1,sample2.rep2"
 # DON'T use SPACEBAR near commas and the colon.
 
-1vs2 = data1:data2
+Rnaivscontrol = RNAi:control
 
 [Steps]
 # Custom the usage to use tools, don't reverse the order in the list
 # for first run
 
+<<<<<<< local
+steps = fs,tp
+=======
 
 # The dependency of tools look like this
 # 
 
 steps = fastqc,tophat,gfold,summary_mapping,summary_rpkm
 
+>>>>>>> other
 [Output]
 # which directory you want to use to output
 
-OUTPUTDIR = micro_test
+OUTPUTDIR = test
 
 # Static data
 # ====================================================================